JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBC1D2_chr9_98194011_98260649	0/0	c0007	2787	6	5	1	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0008	2787	6	4	2	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0009	2787	4	3	1	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0010	2787	4	4	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0011	2787	3	3	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0012	2787	3	3	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0013	2787	2	2	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0014	2787	2	2	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0015	2787	2	2	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0016	2787	2	2	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0017	2787	2	0	0	2	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0018	2787	2	0	1	0	0	1	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0019	2787	2	0	0	2	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0020	2787	2	0	0	2	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0021	2787	1	1	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0022	2787	1	0	0	1	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0023	2787	1	1	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0024	2787	1	1	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0025	2787	1	1	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0026	2787	1	0	1	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0027	2787	1	1	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0028	2787	1	0	0	0	0	1	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0029	2787	1	1	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0030	2787	1	0	1	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0031	2787	1	0	0	0	0	1	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0032	2787	1	0	1	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0033	2787	1	0	0	1	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0034	2787	1	1	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0035	2787	1	1	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0036	2787	1	1	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0037	2787	1	1	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0038	2787	1	1	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0039	2787	1	0	0	1	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0040	2787	1	0	0	1	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0041	2787	1	0	0	1	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D30_chr12_64819647_64886033	1/1	c0001	2286	204	23	46	92	9	32	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	c0002	2286	54	49	4	0	0	1	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	c0003	2286	10	10	0	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	c0004	2286	7	0	3	0	2	2	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	c0005	2286	6	6	0	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	c0006	2286	4	3	1	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	c0007	2286	3	0	0	0	1	2	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	c0008	2286	1	0	1	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	c0009	2286	1	1	0	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	c0010	2286	1	1	0	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	c0011	2286	1	1	0	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	c0012	2286	1	1	0	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	c0013	2286	1	0	0	1	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	c0014	2286	1	0	0	0	0	1	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	c0015	2286	1	1	0	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033