JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBC1D30_chr12_64819647_64886033	0/0	c0016	2286	1	0	0	1	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	c0017	2286	1	0	1	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D31_chr8_123067707_123157153	1/0	c0001	3201	100	22	12	44	5	16	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/1	c0002	3201	68	21	19	21	1	5	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	c0003	3201	61	15	9	28	2	7	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	c0004	3201	31	2	14	10	0	5	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	c0005	3201	13	3	7	0	1	2	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	c0006	3201	7	7	0	0	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	c0007	3201	5	0	5	0	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	c0008	3201	5	0	0	5	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	c0009	3201	5	5	0	0	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	c0010	3201	4	4	0	0	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	c0011	3201	3	3	0	0	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	c0012	3201	2	2	0	0	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	c0013	3201	2	1	0	0	1	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	c0014	3201	2	1	1	0	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	c0015	3201	2	0	0	2	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	c0016	3201	2	0	0	2	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	c0017	3201	1	0	1	0	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	c0018	3201	1	0	1	0	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	c0019	3201	1	0	1	0	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	c0020	3201	1	0	1	0	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	c0021	3201	1	0	0	0	0	1	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	c0022	3201	1	0	1	0	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	c0023	3201	1	1	0	0	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	c0024	3201	1	1	0	0	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	c0025	3201	1	1	0	0	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	c0026	3201	1	1	0	0	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D32_chr6_121074494_121339480	0/0	c0001	3774	80	6	11	41	7	15	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	c0002	3774	55	27	6	22	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	c0003	3774	45	18	13	7	1	6	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	c0004	3774	40	0	9	31	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/1	c0005	3774	36	4	11	8	2	10	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	c0006	3774	6	0	0	6	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	c0007	3774	5	5	0	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	c0008	3774	3	2	1	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	c0009	3774	3	3	0	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	c0010	3774	3	1	1	0	1	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	1/0	c0011	3774	3	2	0	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	c0012	3774	2	0	0	2	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	c0013	3774	1	0	1	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	c0014	3774	1	0	0	1	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	c0015	3774	1	0	1	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	c0016	3774	1	1	0	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	c0017	3774	1	1	0	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	c0018	3774	1	0	0	0	1	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	c0019	3774	1	1	0	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	c0020	3774	1	0	0	1	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	c0021	3774	1	0	0	1	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	c0022	3774	1	0	0	0	0	1	copy fasta	TBC1D32	chr6	121074494	121339480