JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BAG3_chr10_119646380_119682819	0/0	c0019	1728	1	1	0	0	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	c0020	1728	1	0	1	0	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	c0021	1728	1	0	0	1	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	c0022	1728	1	1	0	0	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG4_chr8_38171855_38218301	1/1	c0001	1374	298	69	55	143	12	17	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	c0002	1374	1	0	1	0	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	c0003	1374	1	0	0	0	0	1	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	c0004	1374	1	1	0	0	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	c0005	1374	1	0	0	1	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	c0006	1374	1	0	0	0	0	1	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	c0007	1374	1	0	1	0	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	c0008	1374	1	0	1	0	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	c0009	1374	1	0	0	0	0	1	copy fasta	BAG4	chr8	38171855	38218301
BAG5_chr14_103551551_103567657	1/1	c0001	1344	401	87	72	182	14	44	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	c0002	1344	4	4	0	0	0	0	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	c0003	1344	2	0	0	0	2	0	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	c0004	1344	2	0	0	0	0	2	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	c0005	1344	1	1	0	0	0	0	copy fasta	BAG5	chr14	103551551	103567657
BAG6_chr6_31634028_31657661	0/1	c0001	3489	211	22	42	109	10	27	copy fasta	BAG6	chr6	31634028	31657661
BAG6_chr6_31634028_31657661	0/0	c0002	3489	159	48	34	58	7	12	copy fasta	BAG6	chr6	31634028	31657661
BAG6_chr6_31634028_31657661	0/0	c0003	3489	21	5	2	13	0	1	copy fasta	BAG6	chr6	31634028	31657661
BAG6_chr6_31634028_31657661	0/0	c0004	3489	8	1	1	6	0	0	copy fasta	BAG6	chr6	31634028	31657661
BAG6_chr6_31634028_31657661	0/0	c0005	3489	5	3	0	2	0	0	copy fasta	BAG6	chr6	31634028	31657661
BAG6_chr6_31634028_31657661	0/0	c0006	3489	4	3	1	0	0	0	copy fasta	BAG6	chr6	31634028	31657661
BAG6_chr6_31634028_31657661	0/0	c0007	3489	4	0	0	1	0	3	copy fasta	BAG6	chr6	31634028	31657661
BAG6_chr6_31634028_31657661	0/0	c0008	3489	3	3	0	0	0	0	copy fasta	BAG6	chr6	31634028	31657661
BAG6_chr6_31634028_31657661	0/0	c0009	3489	2	2	0	0	0	0	copy fasta	BAG6	chr6	31634028	31657661
BAG6_chr6_31634028_31657661	0/0	c0010	3489	2	2	0	0	0	0	copy fasta	BAG6	chr6	31634028	31657661
BAG6_chr6_31634028_31657661	0/0	c0011	3489	1	0	0	1	0	0	copy fasta	BAG6	chr6	31634028	31657661
BAG6_chr6_31634028_31657661	0/0	c0012	3489	1	1	0	0	0	0	copy fasta	BAG6	chr6	31634028	31657661
BAG6_chr6_31634028_31657661	0/0	c0013	3489	1	0	0	0	1	0	copy fasta	BAG6	chr6	31634028	31657661
BAG6_chr6_31634028_31657661	0/0	c0014	3489	1	1	0	0	0	0	copy fasta	BAG6	chr6	31634028	31657661
BAG6_chr6_31634028_31657661	0/0	c0015	3489	1	0	0	1	0	0	copy fasta	BAG6	chr6	31634028	31657661
BAG6_chr6_31634028_31657661	0/0	c0016	3489	1	0	0	0	0	1	copy fasta	BAG6	chr6	31634028	31657661
BAG6_chr6_31634028_31657661	0/0	c0017	3489	1	1	0	0	0	0	copy fasta	BAG6	chr6	31634028	31657661
BAG6_chr6_31634028_31657661	0/0	c0018	3489	1	0	0	1	0	0	copy fasta	BAG6	chr6	31634028	31657661
BAHCC1_chr17_81390457_81471331	0/0	c0001	7827	59	13	6	32	1	7	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0002	7827	42	6	12	19	0	5	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0003	7827	28	0	4	21	3	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0004	7827	27	11	11	0	3	2	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0005	7827	9	0	2	4	0	3	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0006	7827	7	0	6	0	1	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/1	c0007	7827	7	6	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0008	7827	6	5	1	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0009	7827	6	3	3	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0010	7827	6	1	2	3	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0011	7827	5	1	1	0	0	3	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0012	7827	5	1	2	0	0	2	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0013	7827	4	0	1	0	0	3	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0014	7827	3	0	3	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331