JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBC1D32_chr6_121074494_121339480	0/0	c0023	3762	1	1	0	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D3B_chr17_36160683_36181636	1/0	c0001	1650	40	1	18	19	1	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0002	1650	25	0	7	9	4	5	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0003	1650	12	3	4	4	0	1	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0004	1650	11	0	0	11	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0005	1650	10	8	2	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0006	1650	9	0	0	7	1	1	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0007	1650	8	1	1	3	0	3	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0008	1650	7	0	2	3	0	2	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0009	1650	7	7	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0010	1650	6	3	0	3	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0011	1650	4	0	0	4	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0012	1650	4	0	0	2	0	2	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0013	1650	4	0	4	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0014	1650	3	0	0	3	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0015	1650	3	3	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0016	1693	3	0	0	3	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0017	1650	3	0	1	0	0	2	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0018	1650	2	2	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0019	1650	2	0	2	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0020	1650	2	0	0	2	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0021	1650	2	0	0	0	2	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0022	1650	2	0	1	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0023	1650	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0024	1650	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0025	1650	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0026	1650	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0027	1650	1	0	0	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0028	1650	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0029	1650	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0030	1650	1	0	0	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0031	1650	1	0	0	0	0	1	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0032	1650	1	0	0	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0033	1650	1	0	0	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0034	1650	1	0	0	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0035	1650	1	0	0	0	0	1	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0036	1650	1	0	0	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0037	1650	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0038	1650	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0039	1650	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0040	1650	1	0	0	0	0	1	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0041	1650	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0042	1650	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0043	1650	1	0	1	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0044	1650	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0045	1650	1	0	0	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0046	1693	1	0	1	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0047	1693	1	0	0	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0048	1693	1	0	0	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	c0049	1650	1	0	0	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636