JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBC1D3D_chr17_37998976_38019908	0/0	c0020	1650	1	1	0	0	0	0	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3D_chr17_37998976_38019908	0/0	c0021	1650	1	0	0	0	0	1	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3D_chr17_37998976_38019908	0/0	c0022	1650	1	0	0	1	0	0	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3E_chr17_38122951_38143868	0/0	c0001	1650	6	0	1	5	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3E_chr17_38122951_38143868	0/0	c0002	1650	3	3	0	0	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3E_chr17_38122951_38143868	0/0	c0003	1650	3	2	0	1	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3E_chr17_38122951_38143868	0/0	c0004	1650	3	1	1	1	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3E_chr17_38122951_38143868	0/0	c0005	1650	2	2	0	0	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3E_chr17_38122951_38143868	0/0	c0006	1650	2	2	0	0	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3E_chr17_38122951_38143868	0/0	c0007	1650	2	2	0	0	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3E_chr17_38122951_38143868	0/0	c0008	1650	2	2	0	0	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3E_chr17_38122951_38143868	0/0	c0009	1650	1	1	0	0	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3E_chr17_38122951_38143868	0/0	c0010	1650	1	1	0	0	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3E_chr17_38122951_38143868	0/0	c0011	1650	1	1	0	0	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3E_chr17_38122951_38143868	0/0	c0012	1650	1	1	0	0	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3E_chr17_38122951_38143868	0/0	c0013	1650	1	1	0	0	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3E_chr17_38122951_38143868	0/0	c0014	1650	1	1	0	0	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3E_chr17_38122951_38143868	0/0	c0015	1650	1	1	0	0	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3E_chr17_38122951_38143868	0/0	c0016	1650	1	1	0	0	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3E_chr17_38122951_38143868	0/0	c0017	1650	1	0	0	1	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3G_chr17_36318884_36339759	0/0	c0001	1650	54	9	8	26	3	8	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	c0002	1650	38	2	14	16	0	6	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	c0003	1650	20	0	16	3	0	1	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	c0004	1650	5	4	1	0	0	0	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	c0005	1650	5	0	2	2	1	0	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	c0006	1650	3	0	0	3	0	0	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	c0007	1650	3	0	2	1	0	0	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	c0008	1650	3	0	0	1	0	2	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	c0009	1650	2	1	1	0	0	0	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	c0010	1650	2	0	0	2	0	0	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	c0011	1650	2	2	0	0	0	0	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	c0012	1650	1	0	1	0	0	0	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	c0013	1650	1	0	1	0	0	0	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	c0014	1650	1	1	0	0	0	0	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	c0015	1650	1	0	0	0	0	1	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	c0016	1650	1	1	0	0	0	0	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	c0017	1650	1	1	0	0	0	0	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	c0018	1650	1	0	0	0	0	1	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	c0019	1650	1	0	0	1	0	0	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	c0020	1650	1	0	0	0	0	1	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	c0021	1650	1	0	0	1	0	0	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	c0022	1650	1	1	0	0	0	0	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3H_chr17_36372531_36393435	0/0	c0001	1650	47	0	13	26	2	6	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0002	1650	20	2	4	6	2	6	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0003	1650	18	2	1	14	0	1	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0004	1650	11	0	3	7	0	1	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0005	1650	8	1	1	3	1	2	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0006	1650	7	0	2	3	0	2	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0007	1650	5	5	0	0	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0008	1693	4	0	0	4	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435