JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBC1D3H_chr17_36372531_36393435	0/0	c0009	1650	3	0	1	1	0	1	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0010	1650	3	0	1	0	0	2	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0011	1650	2	0	0	2	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0012	1650	2	2	0	0	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0013	1650	2	0	0	0	0	2	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0014	1650	2	2	0	0	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0015	1650	2	0	0	2	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0016	1650	1	1	0	0	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0017	1650	1	1	0	0	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0018	1650	1	0	0	1	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0019	1650	1	0	0	0	0	1	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0020	1650	1	1	0	0	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0021	1650	1	1	0	0	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0022	1650	1	0	0	1	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0023	1650	1	0	0	1	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0024	1650	1	0	0	1	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0025	1650	1	1	0	0	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0026	1650	1	0	1	0	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0027	1650	1	1	0	0	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0028	1693	1	0	0	1	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0029	1650	1	1	0	0	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0030	1650	1	0	1	0	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0031	1650	1	0	0	0	1	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0032	1650	1	1	0	0	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0033	1650	1	1	0	0	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0034	1650	1	1	0	0	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	c0035	1650	1	0	0	1	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3I_chr17_36248639_36269570	0/0	c0001	1650	51	1	14	29	0	7	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	c0002	1650	42	2	14	16	2	8	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	c0003	1650	22	17	2	3	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	c0004	1650	18	4	4	9	0	1	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	c0005	1650	7	2	2	1	0	2	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	c0006	1693	4	4	0	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	c0007	1650	4	0	4	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	c0008	1650	3	3	0	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	c0009	1650	3	0	0	3	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	c0010	1650	3	0	0	3	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	c0011	1650	2	2	0	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	c0012	1650	2	0	1	1	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	c0013	1650	1	0	1	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	c0014	1650	1	1	0	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	c0015	1650	1	0	0	0	0	1	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	c0016	1650	1	0	0	0	0	1	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	c0017	1650	1	0	0	1	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	c0018	1650	1	0	0	1	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	c0019	1650	1	1	0	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	c0020	1650	1	0	1	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	c0021	1650	1	1	0	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	c0022	1650	1	1	0	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	c0023	1650	1	1	0	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570