JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBC1D3L_chr17_37973155_37994060	0/0	c0007	1650	1	1	0	0	0	0	copy fasta	TBC1D3L	chr17	37973155	37994060
TBC1D3L_chr17_37973155_37994060	0/0	c0008	1650	1	0	0	1	0	0	copy fasta	TBC1D3L	chr17	37973155	37994060
TBC1D3L_chr17_37973155_37994060	0/0	c0009	1650	1	1	0	0	0	0	copy fasta	TBC1D3L	chr17	37973155	37994060
TBC1D3L_chr17_37973155_37994060	0/0	c0010	1650	1	1	0	0	0	0	copy fasta	TBC1D3L	chr17	37973155	37994060
TBC1D3_chr17_38176659_38197555	0/0	c0001	1650	17	1	4	6	0	6	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0002	1650	9	0	5	1	0	3	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0003	1650	6	0	1	5	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0004	1650	5	1	1	2	0	1	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0005	1650	3	3	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0006	1650	2	0	2	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0007	1650	2	2	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0008	1650	2	2	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0009	1650	2	0	1	1	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0010	1650	2	1	0	1	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0011	1650	2	2	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0012	1650	1	0	0	1	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0013	1650	1	0	0	0	0	1	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0014	1650	1	1	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0015	1650	1	1	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0016	1650	1	0	1	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0017	1650	1	0	1	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0018	1650	1	0	1	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0019	1650	1	1	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0020	1650	1	0	0	1	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0021	1650	1	0	0	1	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0022	1650	1	1	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0023	1650	1	1	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0024	1650	1	1	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0025	1650	1	1	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0026	1650	1	1	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0027	1650	1	1	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0028	1650	1	0	0	0	0	1	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0029	1650	1	0	0	1	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0030	1650	1	1	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	c0031	1650	1	0	1	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D4_chr13_75278503_75487169	0/0	c0001	3897	24	3	1	11	1	8	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0002	3897	21	20	1	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0003	3897	17	3	6	6	0	2	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0004	3897	16	0	4	6	1	5	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0005	3897	16	3	6	3	1	3	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0006	3897	12	7	3	1	0	1	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0007	3897	11	4	4	3	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0008	3897	8	1	0	6	1	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0009	3897	7	6	0	0	0	1	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0010	3897	5	2	1	1	0	1	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0011	3897	4	1	3	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0012	3897	4	4	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0013	3897	4	0	2	2	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0014	3897	4	0	0	4	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0015	3897	3	3	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169