JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBC1D4_chr13_75278503_75487169	0/0	c0016	3897	3	0	1	1	0	1	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0017	3897	3	3	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0018	3897	2	0	0	1	0	1	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0019	3897	2	2	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0020	3897	2	2	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0021	3897	2	0	2	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0022	3897	2	2	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0023	3897	2	2	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0024	3897	2	2	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	1/0	c0025	3897	2	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0026	3897	2	2	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0027	3897	2	0	0	1	0	1	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/1	c0028	3897	2	0	1	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0029	3897	2	1	0	1	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0030	3897	2	2	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0031	3897	2	2	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0032	3897	2	0	2	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0033	3897	1	0	1	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0034	3897	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0035	3897	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0036	3897	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0037	3897	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0038	3897	1	0	1	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0039	3897	1	0	0	1	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0040	3897	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0041	3897	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0042	3897	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0043	3897	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0044	3897	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0045	3897	1	0	0	0	0	1	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0046	3897	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0047	3897	1	0	0	1	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0048	3897	1	0	0	0	0	1	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0049	3897	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0050	3897	1	0	1	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0051	3897	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0052	3897	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0053	3897	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	c0054	3897	1	0	0	1	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D5_chr3_17152168_17747631	1/1	c0001	2454	118	61	24	14	3	14	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	c0002	2454	39	6	15	1	5	12	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	c0003	2454	2	1	1	0	0	0	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	c0004	2454	1	1	0	0	0	0	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	c0005	2454	1	1	0	0	0	0	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	c0006	2454	1	0	0	1	0	0	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D7_chr6_13299951_13333537	1/1	c0001	882	375	49	65	200	18	41	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	c0002	882	35	32	3	0	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	c0003	882	4	4	0	0	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	c0004	882	3	2	1	0	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	c0005	882	3	3	0	0	0	0	copy fasta	TBC1D7	chr6	13299951	13333537