JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBC1D7_chr6_13299951_13333537	0/0	c0006	882	3	3	0	0	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	c0007	882	2	2	0	0	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	c0008	882	2	0	1	1	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	c0009	882	2	0	0	2	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	c0010	882	2	0	0	0	0	2	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	c0011	882	1	0	1	0	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	c0012	882	1	0	0	1	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	c0013	882	1	0	0	1	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	c0014	882	1	1	0	0	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	c0015	882	1	1	0	0	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	c0016	882	1	0	0	1	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	c0017	882	1	1	0	0	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	c0018	882	1	0	0	0	0	1	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	c0019	882	1	0	1	0	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D8B_chrX_106797673_106881150	1/1	c0001	3363	190	32	30	93	7	26	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8B_chrX_106797673_106881150	0/0	c0002	3363	19	18	1	0	0	0	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8B_chrX_106797673_106881150	0/0	c0003	3363	9	8	1	0	0	0	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8B_chrX_106797673_106881150	0/0	c0004	3363	2	0	0	0	2	0	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8B_chrX_106797673_106881150	0/0	c0005	3363	1	1	0	0	0	0	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8B_chrX_106797673_106881150	0/0	c0006	3363	1	0	0	1	0	0	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8B_chrX_106797673_106881150	0/0	c0007	3363	1	1	0	0	0	0	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8B_chrX_106797673_106881150	0/0	c0008	3363	1	0	0	1	0	0	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8B_chrX_106797673_106881150	0/0	c0009	3363	1	0	0	1	0	0	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8B_chrX_106797673_106881150	0/0	c0010	3364	1	0	0	1	0	0	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8_chr2_101002228_101156382	1/1	c0001	3468	146	26	29	70	4	15	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0002	3468	59	4	13	27	3	12	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0003	3468	45	8	8	22	0	7	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0004	3468	13	0	0	12	0	1	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0005	3471	11	10	1	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0006	3468	7	0	2	0	3	2	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0007	3468	4	4	0	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0008	3471	4	4	0	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0009	3468	3	0	0	3	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0010	3468	3	3	0	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0011	3471	3	2	1	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0012	3468	2	2	0	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0013	3468	2	0	1	1	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0014	3468	2	2	0	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0015	3471	2	2	0	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0016	3468	2	1	1	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0017	3468	2	0	0	2	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0018	3468	2	0	2	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0019	3468	2	2	0	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0020	3468	2	2	0	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0021	3468	1	1	0	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0022	3468	1	0	0	1	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0023	3468	1	0	0	1	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0024	3468	1	1	0	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0025	3468	1	1	0	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0026	3468	1	0	0	1	0	0	copy fasta	TBC1D8	chr2	101002228	101156382