JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBC1D8_chr2_101002228_101156382	0/0	c0027	3468	1	1	0	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0028	3471	1	1	0	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0029	3468	1	0	0	1	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0030	3468	1	0	0	1	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0031	3468	1	0	0	0	0	1	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0032	3468	1	0	0	1	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0033	3468	1	1	0	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0034	3468	1	0	0	1	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0035	3471	1	1	0	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	c0036	3468	1	1	0	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D9B_chr5_179857071_179912897	0/1	c0001	3702	195	19	41	103	2	29	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	1/0	c0002	3702	82	12	20	29	9	11	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0003	3702	16	15	1	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0004	3702	9	9	0	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0005	3702	8	8	0	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0006	3702	7	7	0	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0007	3702	6	1	2	3	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0008	3702	5	5	0	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0009	3702	5	5	0	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0010	3702	3	3	0	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0011	3702	2	2	0	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0012	3702	2	0	0	1	0	1	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0013	3702	2	0	0	0	0	2	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0014	3702	1	0	0	0	0	1	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0015	3702	1	1	0	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0016	3702	1	0	0	1	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0017	3702	1	0	0	1	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0018	3684	1	0	0	1	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0019	3702	1	1	0	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0020	3702	1	0	0	0	0	1	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0021	3702	1	0	0	1	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0022	3702	1	0	0	1	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0023	3702	1	0	0	0	0	1	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0024	3702	1	1	0	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0025	3702	1	1	0	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0026	3702	1	0	0	1	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0027	3702	1	1	0	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0028	3702	1	1	0	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0029	3702	1	0	0	1	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0030	3702	1	0	0	0	1	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0031	3702	1	0	0	1	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0032	3702	1	0	0	1	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	c0033	3713	1	0	0	1	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9_chr4_140615782_140761385	0/1	c0001	3801	125	37	26	38	6	17	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	c0002	3801	59	14	21	17	3	4	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	c0003	3801	27	2	3	20	1	1	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	c0004	3801	24	7	6	9	0	2	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	c0005	3801	15	11	2	0	0	2	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	1/0	c0006	3801	12	1	1	9	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	c0007	3801	8	0	0	8	0	0	copy fasta	TBC1D9	chr4	140615782	140761385