JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBC1D9_chr4_140615782_140761385	0/0	c0008	3801	8	7	1	0	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	c0009	3801	6	0	0	6	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	c0010	3801	2	0	0	2	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	c0011	3801	2	0	2	0	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	c0012	3801	1	1	0	0	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	c0013	3801	1	1	0	0	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	c0014	3801	1	0	1	0	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	c0015	3801	1	0	0	1	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	c0016	3801	1	1	0	0	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	c0017	3801	1	1	0	0	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	c0018	3801	1	1	0	0	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	c0019	3801	1	0	1	0	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	c0020	3801	1	1	0	0	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	c0021	3801	1	1	0	0	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBCA_chr5_77686166_77781339	1/1	c0001	327	352	84	52	164	12	38	copy fasta	TBCA	chr5	77686166	77781339
TBCA_chr5_77686166_77781339	0/0	c0002	327	2	0	0	2	0	0	copy fasta	TBCA	chr5	77686166	77781339
TBCB_chr19_36110468_36130941	1/1	c0001	735	441	91	76	204	18	50	copy fasta	TBCB	chr19	36110468	36130941
TBCB_chr19_36110468_36130941	0/0	c0002	735	4	3	1	0	0	0	copy fasta	TBCB	chr19	36110468	36130941
TBCB_chr19_36110468_36130941	0/0	c0003	735	1	0	1	0	0	0	copy fasta	TBCB	chr19	36110468	36130941
TBCB_chr19_36110468_36130941	0/0	c0004	735	1	1	0	0	0	0	copy fasta	TBCB	chr19	36110468	36130941
TBCB_chr19_36110468_36130941	0/0	c0005	735	1	1	0	0	0	0	copy fasta	TBCB	chr19	36110468	36130941
TBCCD1_chr3_186541067_186572339	1/1	c0001	1674	340	66	70	140	18	44	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	c0002	1674	11	9	2	0	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	c0003	1674	8	8	0	0	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	c0004	1674	7	7	0	0	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	c0005	1674	2	2	0	0	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	c0006	1674	1	0	0	1	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	c0007	1674	1	1	0	0	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	c0008	1674	1	0	1	0	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	c0009	1674	1	0	0	1	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	c0010	1674	1	0	1	0	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	c0011	1674	1	1	0	0	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCC_chr6_42739498_42751103	0/1	c0001	1041	335	70	74	132	15	43	copy fasta	TBCC	chr6	42739498	42751103
TBCC_chr6_42739498_42751103	0/0	c0002	1041	20	16	3	0	0	1	copy fasta	TBCC	chr6	42739498	42751103
TBCC_chr6_42739498_42751103	0/0	c0003	1041	18	0	0	17	1	0	copy fasta	TBCC	chr6	42739498	42751103
TBCC_chr6_42739498_42751103	0/0	c0004	1041	4	4	0	0	0	0	copy fasta	TBCC	chr6	42739498	42751103
TBCC_chr6_42739498_42751103	0/0	c0005	1041	4	4	0	0	0	0	copy fasta	TBCC	chr6	42739498	42751103
TBCC_chr6_42739498_42751103	0/0	c0006	1041	2	0	0	2	0	0	copy fasta	TBCC	chr6	42739498	42751103
TBCC_chr6_42739498_42751103	1/0	c0007	1041	2	0	1	0	0	0	copy fasta	TBCC	chr6	42739498	42751103
TBCC_chr6_42739498_42751103	0/0	c0008	1041	1	0	0	1	0	0	copy fasta	TBCC	chr6	42739498	42751103
TBCD_chr17_82747065_82950914	0/0	c0001	3579	65	9	8	34	5	9	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0002	3579	49	11	9	23	1	5	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0003	3579	46	3	15	19	5	4	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/1	c0004	3579	24	0	4	11	2	6	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	1/0	c0005	3579	22	1	8	10	2	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0006	3579	14	10	1	2	0	1	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0007	3579	14	11	2	0	0	1	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0008	3579	14	9	5	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0009	3579	8	7	1	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0010	3579	7	5	2	0	0	0	copy fasta	TBCD	chr17	82747065	82950914