JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BAHCC1_chr17_81390457_81471331	0/0	c0015	7827	3	0	0	0	0	3	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0016	7827	3	0	0	3	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0017	7827	3	0	3	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0018	7827	3	0	2	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0019	7827	3	0	0	3	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0020	7827	3	2	1	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0021	7827	3	1	1	0	1	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0022	7827	3	3	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0023	7827	2	2	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0024	7827	2	0	0	0	0	2	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0025	7827	2	0	0	2	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0026	7827	2	0	0	2	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0027	7827	2	2	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0028	7827	2	0	0	2	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0029	7827	2	1	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0030	7827	2	2	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0031	7827	2	2	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0032	7827	1	0	1	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0033	7827	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0034	7827	1	0	1	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0035	7827	1	0	1	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0036	7827	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0037	7827	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0038	7827	1	0	0	0	1	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0039	7827	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0040	7815	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0041	7827	1	0	0	0	1	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	1/0	c0042	7827	1	0	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0043	7827	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0044	7827	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0045	7827	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0046	7827	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0047	7827	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0048	7827	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0049	7827	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0050	7827	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0051	7827	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0052	7827	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0053	7827	1	0	0	0	0	1	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0054	7827	1	0	0	0	0	1	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0055	7827	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0056	7827	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0057	7827	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0058	7827	1	0	0	0	0	1	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0059	7827	1	0	0	0	0	1	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0060	7827	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0061	7827	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0062	7827	1	0	0	0	0	1	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0063	7827	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	c0064	7827	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331