JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBCD_chr17_82747065_82950914	0/0	c0011	3579	6	5	0	1	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0012	3579	4	4	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0013	3579	3	3	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0014	3579	3	1	2	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0015	3579	3	0	0	3	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0016	3579	2	0	0	2	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0017	3579	2	1	0	1	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0018	3579	2	0	1	0	0	1	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0019	3579	1	1	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0020	3579	1	0	1	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0021	3579	1	1	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0022	3579	1	0	0	1	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0023	3579	1	1	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0024	3579	1	0	0	1	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0025	3579	1	0	0	1	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0026	3579	1	1	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0027	3579	1	0	0	1	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0028	3579	1	1	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0029	3579	1	0	0	1	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0030	3579	1	0	1	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0031	3579	1	0	0	0	0	1	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0032	3579	1	0	0	1	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0033	3579	1	0	0	1	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0034	3579	1	0	0	0	0	1	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0035	3579	1	1	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0036	3579	1	0	0	1	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0037	3579	1	0	0	1	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0038	3567	1	1	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0039	3567	1	0	1	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0040	3579	1	0	0	1	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0041	3579	1	1	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0042	3579	1	1	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0043	3579	1	1	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0044	3579	1	1	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0045	3579	1	0	1	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0046	3579	1	1	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0047	3579	1	0	0	0	0	1	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	c0048	3579	1	0	0	0	1	0	copy fasta	TBCD	chr17	82747065	82950914
TBCEL_chr11_121019102_121095776	1/1	c0001	1275	258	78	54	92	10	22	copy fasta	TBCEL	chr11	121019102	121095776
TBCEL_chr11_121019102_121095776	0/0	c0002	1275	3	2	1	0	0	0	copy fasta	TBCEL	chr11	121019102	121095776
TBCEL_chr11_121019102_121095776	0/0	c0003	1275	2	0	2	0	0	0	copy fasta	TBCEL	chr11	121019102	121095776
TBCEL_chr11_121019102_121095776	0/0	c0004	1275	1	0	1	0	0	0	copy fasta	TBCEL	chr11	121019102	121095776
TBCE_chr1_235362427_235457443	1/1	c0001	1584	254	66	57	85	8	36	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	c0002	1584	3	3	0	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	c0003	1584	3	3	0	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	c0004	1584	2	2	0	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	c0005	1584	2	1	1	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	c0006	1584	1	1	0	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	c0007	1584	1	0	1	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	c0008	1584	1	0	0	1	0	0	copy fasta	TBCE	chr1	235362427	235457443