JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBCE_chr1_235362427_235457443	0/0	c0009	1584	1	0	1	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCK_chr4_106036599_106321209	0/0	c0001	2682	197	33	44	97	6	17	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	c0002	2682	70	4	10	42	1	13	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	c0003	2682	20	18	2	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	c0004	2682	14	14	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	1/0	c0005	2682	8	0	0	7	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	c0006	2682	3	3	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/1	c0007	2682	2	0	1	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	c0008	2682	1	1	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	c0009	2682	1	0	0	1	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	c0010	2682	1	0	1	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	c0011	2682	1	0	0	1	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	c0012	2682	1	0	0	0	1	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	c0013	2682	1	1	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBK1_chr12_64447120_64507114	1/0	c0001	2190	262	66	39	123	7	26	copy fasta	TBK1	chr12	64447120	64507114
TBK1_chr12_64447120_64507114	0/1	c0002	2190	117	21	25	53	5	12	copy fasta	TBK1	chr12	64447120	64507114
TBK1_chr12_64447120_64507114	0/0	c0003	2190	3	0	0	3	0	0	copy fasta	TBK1	chr12	64447120	64507114
TBK1_chr12_64447120_64507114	0/0	c0004	2190	2	0	1	0	0	1	copy fasta	TBK1	chr12	64447120	64507114
TBK1_chr12_64447120_64507114	0/0	c0005	2190	2	2	0	0	0	0	copy fasta	TBK1	chr12	64447120	64507114
TBK1_chr12_64447120_64507114	0/0	c0006	2190	1	0	0	1	0	0	copy fasta	TBK1	chr12	64447120	64507114
TBK1_chr12_64447120_64507114	0/0	c0007	2190	1	0	1	0	0	0	copy fasta	TBK1	chr12	64447120	64507114
TBK1_chr12_64447120_64507114	0/0	c0008	2190	1	1	0	0	0	0	copy fasta	TBK1	chr12	64447120	64507114
TBK1_chr12_64447120_64507114	0/0	c0009	2190	1	0	0	1	0	0	copy fasta	TBK1	chr12	64447120	64507114
TBK1_chr12_64447120_64507114	0/0	c0010	2190	1	0	0	1	0	0	copy fasta	TBK1	chr12	64447120	64507114
TBK1_chr12_64447120_64507114	0/0	c0011	2190	1	0	0	0	0	1	copy fasta	TBK1	chr12	64447120	64507114
TBKBP1_chr17_47689161_47717052	0/1	c0001	1848	157	48	25	67	2	14	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	1/0	c0002	1848	134	28	20	56	7	22	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0003	1848	15	0	0	15	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0004	1849	12	0	3	8	0	1	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0005	1849	11	1	4	4	0	2	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0006	1848	9	2	4	0	2	1	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0007	1848	6	0	5	0	1	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0008	1850	4	1	0	3	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0009	1849	4	2	0	2	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0010	1849	3	0	2	1	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0011	1849	3	0	2	0	0	1	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0012	1848	3	0	0	3	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0013	1848	3	0	0	3	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0014	1848	2	0	0	2	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0015	1849	2	0	0	2	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0016	1849	2	0	2	0	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0017	1848	2	2	0	0	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0018	1848	1	0	0	1	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0019	1849	1	1	0	0	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0020	1849	1	0	0	1	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0021	1850	1	0	0	1	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0022	1850	1	0	0	1	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0023	1849	1	0	0	1	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0024	1850	1	0	0	1	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0025	1848	1	0	0	0	0	1	copy fasta	TBKBP1	chr17	47689161	47717052