JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBKBP1_chr17_47689161_47717052	0/0	c0026	1849	1	0	0	1	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0027	1848	1	0	0	1	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0028	1848	1	1	0	0	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0029	1849	1	0	0	1	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0030	1848	1	0	1	0	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	c0031	1849	1	0	0	1	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBL1XR1_chr3_177014344_177202482	1/1	c0001	1545	305	77	62	112	12	40	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	c0002	1545	1	1	0	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1X_chrX_9460058_9724740	1/1	c0001	1734	174	43	40	62	5	22	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	c0002	1734	15	15	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	c0003	1734	3	3	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	c0004	1734	1	0	1	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	c0005	1734	1	0	0	1	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	c0006	1735	1	0	0	1	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	c0007	1734	1	1	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	c0008	1734	1	1	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	c0009	1734	1	0	0	1	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	c0010	1734	1	1	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1Y_chrY_6905697_7096683	1/0	c0001	1569	126	18	18	68	5	16	copy fasta	TBL1Y	chrY	6905697	7096683
TBL1Y_chrY_6905697_7096683	0/1	c0002	1569	1	0	0	0	0	0	copy fasta	TBL1Y	chrY	6905697	7096683
TBL1Y_chrY_6905697_7096683	0/0	c0003	1569	1	0	1	0	0	0	copy fasta	TBL1Y	chrY	6905697	7096683
TBL2_chr7_73562537_73583579	1/1	c0001	1344	340	62	66	159	15	36	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	c0002	1344	21	19	2	0	0	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	c0003	1344	7	5	2	0	0	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	c0004	1344	4	0	2	0	1	1	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	c0005	1344	3	0	2	0	1	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	c0006	1344	1	0	0	0	1	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	c0007	1344	1	0	0	0	0	1	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	c0008	1344	1	1	0	0	0	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	c0009	1344	1	0	0	1	0	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	c0010	1344	1	1	0	0	0	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	c0011	1344	1	0	0	1	0	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	c0012	1344	1	0	0	0	0	1	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	c0013	1344	1	0	0	0	0	1	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	c0014	1344	1	0	0	1	0	0	copy fasta	TBL2	chr7	73562537	73583579
TBL3_chr16_1967053_1987929	1/0	c0001	2427	196	17	36	100	14	28	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0002	2427	88	35	10	41	0	2	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0003	2427	44	0	18	10	1	15	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0004	2427	15	0	0	15	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0005	2427	12	12	0	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/1	c0006	2427	11	1	7	0	1	1	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0007	2427	7	0	0	7	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0008	2427	7	7	0	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0009	2427	6	5	1	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0010	2427	5	4	0	1	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0011	2427	4	0	0	4	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0012	2427	4	4	0	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0013	2427	3	1	1	0	1	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0014	2427	2	0	2	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0015	2427	2	0	2	0	0	0	copy fasta	TBL3	chr16	1967053	1987929