JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBL3_chr16_1967053_1987929	0/0	c0016	2427	2	2	0	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0017	2427	2	2	0	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0018	2427	2	0	0	2	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0019	2427	2	0	1	0	1	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0020	2427	2	2	0	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0021	2427	2	2	0	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0022	2427	2	0	0	2	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0023	2427	1	1	0	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0024	2427	1	1	0	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0025	2427	1	1	0	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0026	2427	1	0	0	0	0	1	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0027	2427	1	0	0	1	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0028	2427	1	0	0	0	0	1	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0029	2427	1	1	0	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0030	2427	1	0	0	0	0	1	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0031	2427	1	0	0	0	0	1	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	c0032	2427	1	0	0	1	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBPL1_chr6_133948224_133995432	1/1	c0001	561	330	88	64	128	14	34	copy fasta	TBPL1	chr6	133948224	133995432
TBPL2_chr14_55409210_55445616	1/1	c0001	1032	375	86	59	179	12	37	copy fasta	TBPL2	chr14	55409210	55445616
TBPL2_chr14_55409210_55445616	0/0	c0002	1032	13	1	8	1	1	2	copy fasta	TBPL2	chr14	55409210	55445616
TBPL2_chr14_55409210_55445616	0/0	c0003	1032	7	5	1	0	0	1	copy fasta	TBPL2	chr14	55409210	55445616
TBPL2_chr14_55409210_55445616	0/0	c0004	1032	2	0	2	0	0	0	copy fasta	TBPL2	chr14	55409210	55445616
TBPL2_chr14_55409210_55445616	0/0	c0005	1032	1	0	0	1	0	0	copy fasta	TBPL2	chr14	55409210	55445616
TBPL2_chr14_55409210_55445616	0/0	c0006	1032	1	1	0	0	0	0	copy fasta	TBPL2	chr14	55409210	55445616
TBPL2_chr14_55409210_55445616	0/0	c0007	1032	1	1	0	0	0	0	copy fasta	TBPL2	chr14	55409210	55445616
TBPL2_chr14_55409210_55445616	0/0	c0008	1032	1	0	0	0	1	0	copy fasta	TBPL2	chr14	55409210	55445616
TBPL2_chr14_55409210_55445616	0/0	c0009	1032	1	0	0	1	0	0	copy fasta	TBPL2	chr14	55409210	55445616
TBPL2_chr14_55409210_55445616	0/0	c0010	1032	1	1	0	0	0	0	copy fasta	TBPL2	chr14	55409210	55445616
TBPL2_chr14_55409210_55445616	0/0	c0011	1032	1	1	0	0	0	0	copy fasta	TBPL2	chr14	55409210	55445616
TBP_chr6_170549369_170577859	0/0	c0001	1014	112	7	8	86	4	7	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0002	1017	64	11	16	28	1	8	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0003	1011	49	39	3	4	0	3	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0004	1017	31	5	13	10	0	3	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0005	1020	30	0	9	10	3	8	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0006	1020	18	3	8	3	2	2	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0007	1008	16	12	1	3	0	0	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0008	1023	10	0	2	5	1	2	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0009	1005	9	8	0	1	0	0	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0010	1002	7	0	1	6	0	0	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	1/0	c0011	1020	4	0	1	1	1	0	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0012	1005	4	0	2	2	0	0	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0013	1014	3	0	3	0	0	0	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0014	1023	3	0	1	1	0	1	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0015	1020	2	0	1	0	0	1	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0016	1023	2	0	0	1	0	1	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0017	996	2	0	0	1	1	0	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0018	1002	2	0	1	0	0	1	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0019	1008	2	2	0	0	0	0	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0020	1014	2	1	1	0	0	0	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/1	c0021	1020	2	0	1	0	0	0	copy fasta	TBP	chr6	170549369	170577859