JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBP_chr6_170549369_170577859	0/0	c0022	1014	1	0	0	1	0	0	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0023	1005	1	0	0	0	1	0	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0024	1008	1	1	0	0	0	0	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0025	1014	1	1	0	0	0	0	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0026	1014	1	0	0	1	0	0	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0027	1026	1	0	0	1	0	0	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0028	1023	1	0	0	0	0	1	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0029	1011	1	1	0	0	0	0	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0030	1017	1	0	0	1	0	0	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	c0031	1020	1	1	0	0	0	0	copy fasta	TBP	chr6	170549369	170577859
TBR1_chr2_161411297_161430870	1/1	c0001	2049	346	80	60	149	18	37	copy fasta	TBR1	chr2	161411297	161430870
TBR1_chr2_161411297_161430870	0/0	c0002	2049	3	2	0	0	0	1	copy fasta	TBR1	chr2	161411297	161430870
TBR1_chr2_161411297_161430870	0/0	c0003	2049	2	0	2	0	0	0	copy fasta	TBR1	chr2	161411297	161430870
TBR1_chr2_161411297_161430870	0/0	c0004	2049	2	2	0	0	0	0	copy fasta	TBR1	chr2	161411297	161430870
TBR1_chr2_161411297_161430870	0/0	c0005	2049	1	0	0	1	0	0	copy fasta	TBR1	chr2	161411297	161430870
TBR1_chr2_161411297_161430870	0/0	c0006	2049	1	0	0	1	0	0	copy fasta	TBR1	chr2	161411297	161430870
TBR1_chr2_161411297_161430870	0/0	c0007	2049	1	0	0	1	0	0	copy fasta	TBR1	chr2	161411297	161430870
TBRG1_chr11_124617864_124640926	1/1	c0001	1236	407	94	78	178	13	42	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	c0002	1236	36	2	0	34	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	c0003	1236	5	0	0	5	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	c0004	1236	3	3	0	0	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	c0005	1236	3	0	2	0	0	1	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	c0006	1236	2	0	0	2	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	c0007	1236	1	0	0	1	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	c0008	1236	1	0	0	0	0	1	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	c0009	1236	1	0	0	0	1	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	c0010	1236	1	1	0	0	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	c0011	1236	1	0	0	1	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	c0012	1236	1	0	0	1	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG4_chr7_45095100_45116697	1/0	c0001	1896	322	72	51	143	13	42	copy fasta	TBRG4	chr7	45095100	45116697
TBRG4_chr7_45095100_45116697	0/1	c0002	1896	49	0	13	31	3	1	copy fasta	TBRG4	chr7	45095100	45116697
TBRG4_chr7_45095100_45116697	0/0	c0003	1896	15	8	4	2	0	1	copy fasta	TBRG4	chr7	45095100	45116697
TBRG4_chr7_45095100_45116697	0/0	c0004	1896	2	2	0	0	0	0	copy fasta	TBRG4	chr7	45095100	45116697
TBRG4_chr7_45095100_45116697	0/0	c0005	1896	2	2	0	0	0	0	copy fasta	TBRG4	chr7	45095100	45116697
TBRG4_chr7_45095100_45116697	0/0	c0006	1896	2	2	0	0	0	0	copy fasta	TBRG4	chr7	45095100	45116697
TBRG4_chr7_45095100_45116697	0/0	c0007	1896	1	1	0	0	0	0	copy fasta	TBRG4	chr7	45095100	45116697
TBRG4_chr7_45095100_45116697	0/0	c0008	1896	1	0	0	1	0	0	copy fasta	TBRG4	chr7	45095100	45116697
TBRG4_chr7_45095100_45116697	0/0	c0009	1896	1	1	0	0	0	0	copy fasta	TBRG4	chr7	45095100	45116697
TBRG4_chr7_45095100_45116697	0/0	c0010	1896	1	0	0	1	0	0	copy fasta	TBRG4	chr7	45095100	45116697
TBX10_chr11_67626303_67644763	1/1	c0001	1158	262	58	37	126	12	27	copy fasta	TBX10	chr11	67626303	67644763
TBX10_chr11_67626303_67644763	0/0	c0002	1158	85	18	30	22	6	9	copy fasta	TBX10	chr11	67626303	67644763
TBX10_chr11_67626303_67644763	0/0	c0003	1158	21	20	1	0	0	0	copy fasta	TBX10	chr11	67626303	67644763
TBX10_chr11_67626303_67644763	0/0	c0004	1158	6	0	0	6	0	0	copy fasta	TBX10	chr11	67626303	67644763
TBX10_chr11_67626303_67644763	0/0	c0005	1158	2	0	0	2	0	0	copy fasta	TBX10	chr11	67626303	67644763
TBX10_chr11_67626303_67644763	0/0	c0006	1158	1	0	1	0	0	0	copy fasta	TBX10	chr11	67626303	67644763
TBX10_chr11_67626303_67644763	0/0	c0007	1158	1	0	1	0	0	0	copy fasta	TBX10	chr11	67626303	67644763
TBX10_chr11_67626303_67644763	0/0	c0008	1158	1	0	1	0	0	0	copy fasta	TBX10	chr11	67626303	67644763
TBX10_chr11_67626303_67644763	0/0	c0009	1158	1	0	1	0	0	0	copy fasta	TBX10	chr11	67626303	67644763
TBX15_chr1_118878047_118993343	1/1	c0001	1809	282	75	50	111	8	36	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	c0002	1809	29	1	0	28	0	0	copy fasta	TBX15	chr1	118878047	118993343