JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBX15_chr1_118878047_118993343	0/0	c0003	1809	14	0	1	12	1	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	c0004	1809	10	10	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	c0005	1809	8	8	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	c0006	1809	6	0	4	0	1	1	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	c0007	1809	6	0	0	1	0	5	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	c0008	1809	2	0	2	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	c0009	1809	1	0	0	1	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	c0010	1809	1	0	0	1	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	c0011	1809	1	0	0	1	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	c0012	1809	1	1	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	c0013	1809	1	0	0	1	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	c0014	1809	1	1	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	c0015	1809	1	0	1	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX18_chr6_84727496_84769598	1/0	c0001	1824	240	82	48	86	11	12	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/1	c0002	1824	144	6	25	81	5	26	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	c0003	1824	3	0	0	3	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	c0004	1824	3	0	0	0	0	3	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	c0005	1836	2	0	0	2	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	c0006	1824	2	2	0	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	c0007	1824	2	0	0	2	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	c0008	1824	1	0	0	1	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	c0009	1824	1	0	0	1	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	c0010	1824	1	1	0	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	c0011	1824	1	1	0	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	c0012	1824	1	0	0	0	0	1	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	c0013	1824	1	0	1	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	c0014	1824	1	1	0	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	c0015	1824	1	1	0	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX19_chr1_168275877_168319426	1/1	c0001	1347	366	86	64	160	12	42	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	c0002	1347	3	0	0	3	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	c0003	1347	3	2	1	0	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	c0004	1347	2	0	0	0	0	2	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	c0005	1347	1	1	0	0	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	c0006	1347	1	1	0	0	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	c0007	1347	1	1	0	0	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	c0008	1347	1	0	0	1	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	c0009	1347	1	0	1	0	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	c0010	1347	1	1	0	0	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	c0011	1347	1	1	0	0	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	c0012	1347	1	1	0	0	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX1_chr22_19755778_19772334	1/0	c0001	1515	169	38	35	74	5	16	copy fasta	TBX1	chr22	19755778	19772334
TBX1_chr22_19755778_19772334	0/0	c0002	1515	109	42	19	26	2	20	copy fasta	TBX1	chr22	19755778	19772334
TBX1_chr22_19755778_19772334	0/1	c0003	1515	100	1	19	65	8	6	copy fasta	TBX1	chr22	19755778	19772334
TBX1_chr22_19755778_19772334	0/0	c0004	1515	21	18	3	0	0	0	copy fasta	TBX1	chr22	19755778	19772334
TBX1_chr22_19755778_19772334	0/0	c0005	1515	16	0	0	14	0	2	copy fasta	TBX1	chr22	19755778	19772334
TBX1_chr22_19755778_19772334	0/0	c0006	1515	7	0	0	7	0	0	copy fasta	TBX1	chr22	19755778	19772334
TBX1_chr22_19755778_19772334	0/0	c0007	1515	3	0	3	0	0	0	copy fasta	TBX1	chr22	19755778	19772334
TBX1_chr22_19755778_19772334	0/0	c0008	1515	2	0	0	2	0	0	copy fasta	TBX1	chr22	19755778	19772334
TBX1_chr22_19755778_19772334	0/0	c0009	1515	1	0	0	1	0	0	copy fasta	TBX1	chr22	19755778	19772334
TBX1_chr22_19755778_19772334	0/0	c0010	1515	1	0	0	0	1	0	copy fasta	TBX1	chr22	19755778	19772334