JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBX1_chr22_19755778_19772334	0/0	c0011	1515	1	0	0	1	0	0	copy fasta	TBX1	chr22	19755778	19772334
TBX1_chr22_19755778_19772334	0/0	c0012	1476	1	1	0	0	0	0	copy fasta	TBX1	chr22	19755778	19772334
TBX1_chr22_19755778_19772334	0/0	c0013	1515	1	0	1	0	0	0	copy fasta	TBX1	chr22	19755778	19772334
TBX20_chr7_35197430_35259100	0/1	c0001	1344	197	64	39	70	3	20	copy fasta	TBX20	chr7	35197430	35259100
TBX20_chr7_35197430_35259100	1/0	c0002	1344	78	6	19	42	2	8	copy fasta	TBX20	chr7	35197430	35259100
TBX20_chr7_35197430_35259100	0/0	c0003	1344	14	12	2	0	0	0	copy fasta	TBX20	chr7	35197430	35259100
TBX20_chr7_35197430_35259100	0/0	c0004	1344	8	0	0	8	0	0	copy fasta	TBX20	chr7	35197430	35259100
TBX20_chr7_35197430_35259100	0/0	c0005	1344	4	4	0	0	0	0	copy fasta	TBX20	chr7	35197430	35259100
TBX20_chr7_35197430_35259100	0/0	c0006	1344	1	0	0	0	1	0	copy fasta	TBX20	chr7	35197430	35259100
TBX21_chr17_47728236_47751122	1/1	c0001	1608	265	59	42	131	9	22	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	c0002	1608	55	19	20	4	3	9	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	c0003	1608	31	1	7	13	2	8	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	c0004	1608	29	1	8	16	0	4	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	c0005	1608	2	1	0	1	0	0	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	c0006	1608	2	0	0	2	0	0	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	c0007	1608	2	2	0	0	0	0	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	c0008	1608	2	0	0	1	0	1	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	c0009	1608	1	0	1	0	0	0	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	c0010	1608	1	1	0	0	0	0	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	c0011	1608	1	1	0	0	0	0	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	c0012	1608	1	0	0	1	0	0	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	c0013	1608	1	1	0	0	0	0	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	c0014	1608	1	0	0	1	0	0	copy fasta	TBX21	chr17	47728236	47751122
TBX22_chrX_80009753_80036774	0/1	c0001	1563	286	55	55	139	9	27	copy fasta	TBX22	chrX	80009753	80036774
TBX22_chrX_80009753_80036774	0/0	c0002	1563	28	23	5	0	0	0	copy fasta	TBX22	chrX	80009753	80036774
TBX22_chrX_80009753_80036774	0/0	c0003	1563	4	0	0	4	0	0	copy fasta	TBX22	chrX	80009753	80036774
TBX22_chrX_80009753_80036774	0/0	c0004	1563	2	0	0	0	2	0	copy fasta	TBX22	chrX	80009753	80036774
TBX22_chrX_80009753_80036774	0/0	c0005	1563	1	1	0	0	0	0	copy fasta	TBX22	chrX	80009753	80036774
TBX22_chrX_80009753_80036774	0/0	c0006	1563	1	0	0	0	0	1	copy fasta	TBX22	chrX	80009753	80036774
TBX22_chrX_80009753_80036774	0/0	c0007	1563	1	1	0	0	0	0	copy fasta	TBX22	chrX	80009753	80036774
TBX22_chrX_80009753_80036774	0/0	c0008	1563	1	0	0	1	0	0	copy fasta	TBX22	chrX	80009753	80036774
TBX22_chrX_80009753_80036774	0/0	c0009	1563	1	0	0	1	0	0	copy fasta	TBX22	chrX	80009753	80036774
TBX2_chr17_61394843_61414466	0/1	c0001	2139	182	20	44	77	12	28	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	1/0	c0002	2139	167	62	23	63	4	14	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	c0003	2139	62	2	9	45	1	5	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	c0004	2139	5	0	0	5	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	c0005	2139	4	0	3	0	1	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	c0006	2139	3	3	0	0	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	c0007	2139	2	2	0	0	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	c0008	2139	1	0	0	0	0	1	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	c0009	2139	1	0	0	1	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	c0010	2139	1	1	0	0	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	c0011	2139	1	1	0	0	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	c0012	2139	1	1	0	0	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	c0013	2139	1	1	0	0	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	c0014	2139	1	1	0	0	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	c0015	2139	1	1	0	0	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	c0016	2139	1	0	1	0	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	c0017	2139	1	1	0	0	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	c0018	2139	1	0	0	1	0	0	copy fasta	TBX2	chr17	61394843	61414466