JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBX2_chr17_61394843_61414466	0/0	c0019	2139	1	0	0	1	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	c0020	2139	1	0	0	1	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX3_chr12_114665255_114689175	1/1	c0001	2172	400	75	71	194	16	42	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	c0002	2172	7	7	0	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	c0003	2172	7	7	0	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	c0004	2172	5	4	1	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	c0005	2172	2	0	1	0	0	1	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	c0006	2172	2	2	0	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	c0007	2172	2	1	1	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	c0008	2172	2	0	0	2	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	c0009	2172	1	0	0	0	1	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	c0010	2172	1	0	0	1	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	c0011	2172	1	0	0	1	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	c0012	2172	1	0	0	1	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	c0013	2172	1	0	0	0	0	1	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	c0014	2172	1	1	0	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	c0015	2172	1	1	0	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	c0016	2172	1	0	0	1	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	c0017	2172	1	0	0	0	1	0	copy fasta	TBX3	chr12	114665255	114689175
TBX4_chr17_61447422_61490110	1/1	c0001	1641	211	31	48	97	10	23	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0002	1641	61	2	11	42	2	4	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0003	1641	31	29	2	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0004	1641	25	12	8	0	2	3	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0005	1641	24	7	2	10	1	4	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0006	1641	11	3	1	4	0	3	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0007	1641	10	0	2	8	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0008	1641	9	1	0	7	0	1	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0009	1641	3	3	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0010	1641	3	0	1	2	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0011	1641	2	0	0	2	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0012	1641	2	1	1	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0013	1641	2	1	1	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0014	1641	2	2	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0015	1641	2	0	1	0	0	1	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0016	1641	1	0	0	1	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0017	1641	1	0	1	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0018	1641	1	0	0	0	1	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0019	1641	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0020	1641	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0021	1641	1	0	0	1	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0022	1641	1	0	0	1	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0023	1641	1	0	0	1	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0024	1641	1	0	1	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0025	1641	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0026	1641	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	c0027	1641	1	0	0	0	0	1	copy fasta	TBX4	chr17	61447422	61490110
TBX5_chr12_114348911_114411144	1/1	c0001	1557	360	69	72	153	16	48	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	c0002	1557	15	11	4	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	c0003	1557	5	5	0	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	c0004	1557	2	0	0	2	0	0	copy fasta	TBX5	chr12	114348911	114411144