JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBX5_chr12_114348911_114411144	0/0	c0005	1557	2	2	0	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	c0006	1557	1	1	0	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	c0007	1557	1	0	0	1	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	c0008	1557	1	0	1	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	c0009	1557	1	0	1	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	c0010	1557	1	1	0	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	c0011	1557	1	1	0	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX6_chr16_30080793_30096924	1/1	c0001	1311	246	78	41	87	7	31	copy fasta	TBX6	chr16	30080793	30096924
TBX6_chr16_30080793_30096924	0/0	c0002	1311	125	1	33	82	2	7	copy fasta	TBX6	chr16	30080793	30096924
TBX6_chr16_30080793_30096924	0/0	c0003	1311	3	3	0	0	0	0	copy fasta	TBX6	chr16	30080793	30096924
TBX6_chr16_30080793_30096924	0/0	c0004	1311	2	0	0	0	0	2	copy fasta	TBX6	chr16	30080793	30096924
TBX6_chr16_30080793_30096924	0/0	c0005	1311	2	0	0	2	0	0	copy fasta	TBX6	chr16	30080793	30096924
TBX6_chr16_30080793_30096924	0/0	c0006	1311	1	0	0	1	0	0	copy fasta	TBX6	chr16	30080793	30096924
TBX6_chr16_30080793_30096924	0/0	c0007	1311	1	0	0	1	0	0	copy fasta	TBX6	chr16	30080793	30096924
TBX6_chr16_30080793_30096924	0/0	c0008	1311	1	1	0	0	0	0	copy fasta	TBX6	chr16	30080793	30096924
TBX6_chr16_30080793_30096924	0/0	c0009	1311	1	1	0	0	0	0	copy fasta	TBX6	chr16	30080793	30096924
TBX6_chr16_30080793_30096924	0/0	c0010	1311	1	0	0	1	0	0	copy fasta	TBX6	chr16	30080793	30096924
TBX6_chr16_30080793_30096924	0/0	c0011	1311	1	0	0	0	1	0	copy fasta	TBX6	chr16	30080793	30096924
TBXA2R_chr19_3589507_3611875	0/0	c0001	1032	145	2	23	109	3	8	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/1	c0002	1032	125	51	32	23	7	11	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	1/0	c0003	1032	100	22	13	39	3	22	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	c0004	1032	30	13	10	2	3	2	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	c0005	1032	16	0	2	9	0	5	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	c0006	1032	5	5	0	0	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	c0007	1032	1	0	0	1	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	c0008	1032	1	1	0	0	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	c0009	1032	1	0	0	1	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	c0010	1032	1	1	0	0	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	c0011	1032	1	1	0	0	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	c0012	1032	1	0	0	1	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	c0013	1032	1	0	0	1	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXAS1_chr7_139824264_140025293	1/1	c0001	1602	221	64	50	71	5	29	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	c0002	1602	14	14	0	0	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	c0003	1602	6	0	0	6	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	c0004	1602	5	4	1	0	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	c0005	1602	3	3	0	0	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	c0006	1602	3	3	0	0	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	c0007	1602	3	0	0	3	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	c0008	1602	2	0	2	0	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	c0009	1602	2	0	0	2	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	c0010	1602	2	0	2	0	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	c0011	1602	2	2	0	0	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	c0012	1602	1	0	0	1	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	c0013	1602	1	0	0	0	0	1	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	c0014	1602	1	0	0	1	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	c0015	1602	1	0	0	1	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	c0016	1602	1	0	1	0	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	c0017	1602	1	0	0	0	1	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	c0018	1602	1	0	0	1	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXT_chr6_166152656_166172851	0/0	c0001	1311	137	19	5	105	2	6	copy fasta	TBXT	chr6	166152656	166172851