JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBXT_chr6_166152656_166172851	0/0	c0002	1311	105	4	22	60	6	13	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	1/0	c0003	1311	91	30	22	22	6	10	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	c0004	1311	46	11	23	4	3	5	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/1	c0005	1311	20	1	5	11	0	2	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	c0006	1311	20	15	0	0	0	5	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	c0007	1311	7	1	0	1	1	4	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	c0008	1311	6	0	0	6	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	c0009	1311	5	5	0	0	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	c0010	1311	5	4	1	0	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	c0011	1311	3	3	0	0	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	c0012	1311	2	0	0	2	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	c0013	1311	2	0	0	2	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	c0014	1311	2	0	0	2	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	c0015	1311	1	0	1	0	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	c0016	1311	1	0	1	0	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	c0017	1311	1	0	0	1	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	c0018	1311	1	0	0	0	0	1	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	c0019	1311	1	1	0	0	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	c0020	1311	1	0	0	1	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	c0021	1311	1	0	0	1	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	c0022	1311	1	1	0	0	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	c0023	1311	1	1	0	0	0	0	copy fasta	TBXT	chr6	166152656	166172851
TC2N_chr14_91774746_91872536	0/0	c0001	1473	274	79	46	108	12	29	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/1	c0002	1473	56	7	12	27	2	7	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	1/0	c0003	1473	8	7	0	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	c0004	1473	3	3	0	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	c0005	1473	1	1	0	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	c0006	1473	1	0	0	1	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	c0007	1473	1	1	0	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TCAF1_chr7_143846375_143907176	0/1	c0001	2766	131	36	33	48	7	6	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	c0002	2766	40	14	4	19	1	2	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	c0003	2766	33	4	3	26	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	c0004	2766	32	3	3	23	1	2	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	c0005	2766	4	4	0	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	c0006	2766	3	2	0	1	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	1/0	c0007	2766	3	2	0	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	c0008	2766	2	2	0	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	c0009	2766	1	0	0	1	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	c0010	2766	1	0	0	0	1	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	c0011	2766	1	0	1	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	c0012	2766	1	0	1	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	c0013	2766	1	0	0	1	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	c0014	2766	1	0	0	1	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	c0015	2766	1	1	0	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	c0016	2766	1	0	1	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAIM_chr3_44333766_44414448	1/1	c0001	1491	234	84	55	56	11	26	copy fasta	TCAIM	chr3	44333766	44414448
TCAIM_chr3_44333766_44414448	0/0	c0002	1491	5	5	0	0	0	0	copy fasta	TCAIM	chr3	44333766	44414448
TCAIM_chr3_44333766_44414448	0/0	c0003	1491	4	3	0	0	1	0	copy fasta	TCAIM	chr3	44333766	44414448
TCAIM_chr3_44333766_44414448	0/0	c0004	1491	4	0	0	4	0	0	copy fasta	TCAIM	chr3	44333766	44414448
TCAIM_chr3_44333766_44414448	0/0	c0005	1491	1	0	1	0	0	0	copy fasta	TCAIM	chr3	44333766	44414448