JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TCEAL8_chrX_103247995_103260155	0/0	c0002	354	1	0	0	1	0	0	copy fasta	TCEAL8	chrX	103247995	103260155
TCEAL9_chrX_103351506_103363462	1/1	c0001	315	330	76	60	148	13	31	copy fasta	TCEAL9	chrX	103351506	103363462
TCEAL9_chrX_103351506_103363462	0/0	c0002	317	1	0	0	0	0	1	copy fasta	TCEAL9	chrX	103351506	103363462
TCEANC2_chr1_54048608_54111082	1/1	c0001	627	344	90	63	155	10	24	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	c0002	627	5	0	0	5	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	c0003	627	5	4	1	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC_chrX_13648141_13670409	0/1	c0001	1056	163	31	25	84	5	17	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	1/0	c0002	1056	129	28	25	56	6	13	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	c0003	1056	12	12	0	0	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	c0004	1056	7	3	2	2	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	c0005	1056	6	4	2	0	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	c0006	1056	3	0	0	3	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	c0007	1056	1	0	0	1	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	c0008	1056	1	0	1	0	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	c0009	1054	1	0	0	1	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	c0010	1056	1	0	1	0	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCERG1L_chr10_131087391_131316721	1/1	c0001	1761	223	62	50	78	8	23	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	c0002	1761	61	7	14	25	6	9	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	c0003	1761	12	0	0	12	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	c0004	1761	8	7	1	0	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	c0005	1764	7	6	1	0	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	c0006	1761	2	0	0	2	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	c0007	1761	1	0	0	0	1	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	c0008	1761	1	0	1	0	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	c0009	1761	1	0	0	0	0	1	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	c0010	1761	1	0	0	0	1	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	c0011	1761	1	0	0	1	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	c0012	1761	1	1	0	0	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	c0013	1761	1	0	0	0	0	1	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	c0014	1761	1	1	0	0	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	c0015	1761	1	1	0	0	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	c0016	1761	1	0	1	0	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	c0017	1761	1	1	0	0	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1_chr5_146442333_146516961	0/1	c0001	3348	263	59	41	129	7	26	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	c0002	3348	14	4	5	0	0	5	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	c0003	3348	10	10	0	0	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	1/0	c0004	3348	6	1	3	0	0	1	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	c0005	3336	4	0	4	0	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	c0006	3330	3	0	1	0	2	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	c0007	3336	2	2	0	0	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	c0008	3348	2	2	0	0	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	c0009	3348	2	2	0	0	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	c0010	3354	2	1	0	0	1	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	c0011	3342	2	2	0	0	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	c0012	3348	1	0	1	0	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	c0013	3330	1	0	0	1	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	c0014	3342	1	0	1	0	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	c0015	3348	1	0	0	1	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	c0016	3348	1	0	0	0	1	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	c0017	3360	1	0	0	0	1	0	copy fasta	TCERG1	chr5	146442333	146516961