JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TCERG1_chr5_146442333_146516961	0/0	c0018	3348	1	0	0	1	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	c0019	3330	1	1	0	0	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	c0020	3336	1	1	0	0	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	c0021	3354	1	1	0	0	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCF12_chr15_56913644_57294853	1/0	c0001	2121	247	52	48	102	12	32	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	c0002	2121	32	3	0	28	0	1	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/1	c0003	2121	19	0	17	0	0	1	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	c0004	2121	15	15	0	0	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	c0005	2121	13	10	3	0	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	c0006	2121	1	0	1	0	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	c0007	2121	1	1	0	0	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	c0008	2121	1	0	1	0	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	c0009	2121	1	1	0	0	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF15_chr20_599257_615309	0/1	c0001	600	371	61	69	193	9	38	copy fasta	TCF15	chr20	599257	615309
TCF15_chr20_599257_615309	0/0	c0002	600	38	19	9	0	3	7	copy fasta	TCF15	chr20	599257	615309
TCF15_chr20_599257_615309	0/0	c0003	600	14	13	1	0	0	0	copy fasta	TCF15	chr20	599257	615309
TCF15_chr20_599257_615309	0/0	c0004	600	2	0	2	0	0	0	copy fasta	TCF15	chr20	599257	615309
TCF15_chr20_599257_615309	0/0	c0005	600	1	0	1	0	0	0	copy fasta	TCF15	chr20	599257	615309
TCF15_chr20_599257_615309	0/0	c0006	600	1	0	0	1	0	0	copy fasta	TCF15	chr20	599257	615309
TCF15_chr20_599257_615309	0/0	c0007	600	1	0	0	0	0	1	copy fasta	TCF15	chr20	599257	615309
TCF15_chr20_599257_615309	1/0	c0008	600	1	0	0	0	0	0	copy fasta	TCF15	chr20	599257	615309
TCF15_chr20_599257_615309	0/0	c0009	600	1	1	0	0	0	0	copy fasta	TCF15	chr20	599257	615309
TCF19_chr6_31153589_31169215	0/1	c0001	1038	265	65	49	107	11	32	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	c0002	1038	93	7	13	63	3	7	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	c0003	1038	38	10	2	20	1	5	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	c0004	1038	23	7	8	7	0	1	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	c0005	1038	7	1	4	0	2	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	c0006	1039	6	0	0	6	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	c0007	1039	6	0	0	2	1	3	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	c0008	1038	4	0	0	4	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	c0009	1038	3	3	0	0	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	c0010	1038	1	0	0	1	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	c0011	1039	1	0	0	1	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	c0012	1038	1	0	1	0	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	c0013	1038	1	1	0	0	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	c0014	1038	1	0	1	0	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	c0015	1039	1	0	0	1	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF20_chr22_42155013_42275653	0/0	c0001	5883	132	32	28	57	4	11	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/1	c0002	5883	88	15	18	40	6	8	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0003	5883	62	3	12	39	5	3	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0004	5883	24	8	11	1	0	4	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0005	5883	13	13	0	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0006	5883	4	4	0	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0007	5883	4	4	0	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0008	5883	3	0	0	1	0	2	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0009	5883	3	3	0	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0010	5883	2	1	1	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0011	5883	2	2	0	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0012	5883	1	1	0	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0013	5883	1	0	0	1	0	0	copy fasta	TCF20	chr22	42155013	42275653