JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TCF20_chr22_42155013_42275653	0/0	c0014	5883	1	0	0	1	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0015	5883	1	0	0	0	0	1	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0016	5883	1	0	0	0	0	1	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0017	5883	1	0	0	0	1	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0018	5883	1	1	0	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0019	5883	1	0	1	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0020	5883	1	0	1	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0021	5883	1	0	0	0	0	1	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0022	5883	1	0	0	0	0	1	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0023	5883	1	0	0	1	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0024	5883	1	1	0	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0025	5883	1	0	0	1	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0026	5883	1	1	0	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0027	5883	1	0	0	0	0	1	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0028	5883	1	0	0	0	0	1	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	c0029	5883	1	1	0	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF21_chr6_133884113_133897257	1/1	c0001	540	398	72	80	190	16	38	copy fasta	TCF21	chr6	133884113	133897257
TCF21_chr6_133884113_133897257	0/0	c0002	540	27	26	0	1	0	0	copy fasta	TCF21	chr6	133884113	133897257
TCF21_chr6_133884113_133897257	0/0	c0003	540	3	0	3	0	0	0	copy fasta	TCF21	chr6	133884113	133897257
TCF21_chr6_133884113_133897257	0/0	c0004	540	2	0	0	2	0	0	copy fasta	TCF21	chr6	133884113	133897257
TCF21_chr6_133884113_133897257	0/0	c0005	540	2	0	0	1	0	1	copy fasta	TCF21	chr6	133884113	133897257
TCF21_chr6_133884113_133897257	0/0	c0006	550	1	0	0	1	0	0	copy fasta	TCF21	chr6	133884113	133897257
TCF21_chr6_133884113_133897257	0/0	c0007	540	1	0	0	1	0	0	copy fasta	TCF21	chr6	133884113	133897257
TCF21_chr6_133884113_133897257	0/0	c0008	540	1	0	1	0	0	0	copy fasta	TCF21	chr6	133884113	133897257
TCF21_chr6_133884113_133897257	0/0	c0009	540	1	0	0	0	0	1	copy fasta	TCF21	chr6	133884113	133897257
TCF23_chr2_27144004_27161974	1/1	c0001	645	382	87	72	167	18	36	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	c0002	645	2	2	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	c0003	645	1	0	0	1	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	c0004	645	1	1	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF24_chr8_66941501_66967591	1/1	c0001	504	286	75	51	113	12	33	copy fasta	TCF24	chr8	66941501	66967591
TCF24_chr8_66941501_66967591	0/0	c0002	504	20	3	0	11	0	6	copy fasta	TCF24	chr8	66941501	66967591
TCF24_chr8_66941501_66967591	0/0	c0003	504	3	2	1	0	0	0	copy fasta	TCF24	chr8	66941501	66967591
TCF24_chr8_66941501_66967591	0/0	c0004	504	1	0	0	0	0	1	copy fasta	TCF24	chr8	66941501	66967591
TCF25_chr16_89868592_89916379	1/1	c0001	2031	221	56	60	57	13	33	copy fasta	TCF25	chr16	89868592	89916379
TCF25_chr16_89868592_89916379	0/0	c0002	2031	28	0	1	24	1	2	copy fasta	TCF25	chr16	89868592	89916379
TCF25_chr16_89868592_89916379	0/0	c0003	2031	22	16	2	0	0	4	copy fasta	TCF25	chr16	89868592	89916379
TCF25_chr16_89868592_89916379	0/0	c0004	2031	14	14	0	0	0	0	copy fasta	TCF25	chr16	89868592	89916379
TCF25_chr16_89868592_89916379	0/0	c0005	2031	5	0	0	3	0	2	copy fasta	TCF25	chr16	89868592	89916379
TCF25_chr16_89868592_89916379	0/0	c0006	2031	2	2	0	0	0	0	copy fasta	TCF25	chr16	89868592	89916379
TCF25_chr16_89868592_89916379	0/0	c0007	2031	1	0	0	1	0	0	copy fasta	TCF25	chr16	89868592	89916379
TCF25_chr16_89868592_89916379	0/0	c0008	2031	1	0	0	0	0	1	copy fasta	TCF25	chr16	89868592	89916379
TCF25_chr16_89868592_89916379	0/0	c0009	2031	1	1	0	0	0	0	copy fasta	TCF25	chr16	89868592	89916379
TCF25_chr16_89868592_89916379	0/0	c0010	2031	1	0	1	0	0	0	copy fasta	TCF25	chr16	89868592	89916379
TCF25_chr16_89868592_89916379	0/0	c0011	2031	1	0	0	1	0	0	copy fasta	TCF25	chr16	89868592	89916379
TCF25_chr16_89868592_89916379	0/0	c0012	2031	1	0	0	1	0	0	copy fasta	TCF25	chr16	89868592	89916379
TCF25_chr16_89868592_89916379	0/0	c0013	2031	1	1	0	0	0	0	copy fasta	TCF25	chr16	89868592	89916379
TCF25_chr16_89868592_89916379	0/0	c0014	2031	1	0	0	1	0	0	copy fasta	TCF25	chr16	89868592	89916379
TCF3_chr19_1604292_1657615	0/0	c0001	1965	57	0	9	46	0	2	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0002	1965	57	32	9	12	0	4	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	1/1	c0003	1965	54	8	20	7	6	11	copy fasta	TCF3	chr19	1604292	1657615