JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TCF3_chr19_1604292_1657615	0/0	c0004	1965	47	11	25	6	3	2	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0005	1965	47	10	9	16	1	11	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0006	1965	29	1	0	24	1	3	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0007	1965	21	7	2	8	0	4	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0008	1965	5	0	0	0	1	4	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0009	1965	4	3	1	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0010	1965	3	3	0	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0011	1965	2	2	0	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0012	1965	2	2	0	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0013	1965	2	1	1	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0014	1965	2	2	0	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0015	1965	1	1	0	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0016	1965	1	0	1	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0017	1965	1	0	0	0	0	1	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0018	1965	1	0	1	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0019	1965	1	1	0	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0020	1965	1	0	0	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0021	1965	1	1	0	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0022	1965	1	0	0	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0023	1965	1	1	0	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0024	1965	1	1	0	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0025	1965	1	0	0	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0026	1965	1	0	0	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0027	1965	1	0	1	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0028	1965	1	0	0	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0029	1965	1	0	0	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0030	1965	1	1	0	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0031	1965	1	0	0	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0032	1965	1	0	0	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0033	1965	1	0	1	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	c0034	1965	1	0	0	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF4_chr18_55217185_55593192	1/1	c0001	2016	75	35	12	16	0	10	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	c0002	2016	46	17	14	10	2	3	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	c0003	2016	1	0	0	0	0	1	copy fasta	TCF4	chr18	55217185	55593192
TCF7L1_chr2_85128392_85315387	1/0	c0001	1767	130	38	30	44	5	12	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/1	c0002	1764	84	36	15	18	7	7	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	c0003	1764	4	4	0	0	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	c0004	1767	3	0	2	0	0	1	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	c0005	1767	2	2	0	0	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	c0006	1767	2	2	0	0	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	c0007	1764	1	1	0	0	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	c0008	1764	1	1	0	0	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	c0009	1764	1	1	0	0	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	c0010	1764	1	1	0	0	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	c0011	1767	1	1	0	0	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	c0012	1767	1	1	0	0	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	c0013	1767	1	0	0	1	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	c0014	1767	1	1	0	0	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	c0015	1767	1	0	0	1	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	c0016	1767	1	1	0	0	0	0	copy fasta	TCF7L1	chr2	85128392	85315387