JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TCF7L1_chr2_85128392_85315387	0/0	c0017	1767	1	0	1	0	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L2_chr10_112945247_113172678	1/1	c0001	1860	166	73	45	20	9	17	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	c0002	1860	13	0	2	8	0	3	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	c0003	1860	5	4	1	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	c0004	1860	4	3	1	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	c0005	1860	3	3	0	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	c0006	1860	2	2	0	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	c0007	1860	1	0	0	1	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	c0008	1860	1	1	0	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	c0009	1860	1	0	0	0	1	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	c0010	1860	1	0	0	1	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	c0011	1860	1	0	0	0	0	1	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	c0012	1860	1	0	0	0	0	1	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	c0013	1860	1	0	1	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7_chr5_134109681_134153210	1/1	c0001	1155	310	64	55	141	14	34	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	c0002	1155	11	10	1	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	c0003	1155	7	1	4	0	0	2	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	c0004	1155	4	0	0	0	0	4	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	c0005	1155	2	2	0	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	c0006	1155	2	0	0	0	0	2	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	c0007	1155	2	1	1	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	c0008	1155	1	1	0	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	c0009	1155	1	1	0	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	c0010	1155	1	0	0	0	0	1	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	c0011	1155	1	0	0	1	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	c0012	1155	1	0	0	0	0	1	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	c0013	1155	1	0	1	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCFL5_chr20_62836005_62866822	1/1	c0001	1503	308	67	67	136	7	29	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	c0002	1503	42	13	4	21	1	3	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	c0003	1503	27	8	10	0	3	6	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	c0004	1503	3	3	0	0	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	c0005	1497	3	3	0	0	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	c0006	1503	2	2	0	0	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	c0007	1503	1	0	1	0	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	c0008	1503	1	0	0	0	1	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	c0009	1503	1	0	0	0	1	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	c0010	1503	1	0	0	1	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	c0011	1503	1	0	0	0	1	0	copy fasta	TCFL5	chr20	62836005	62866822
TCHHL1_chr1_152079141_152094064	1/1	c0001	2715	311	68	57	127	14	43	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	c0002	2715	29	0	12	17	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	c0003	2715	12	12	0	0	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	c0004	2715	3	0	3	0	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	c0005	2715	3	0	0	3	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	c0006	2715	2	2	0	0	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	c0007	2715	2	2	0	0	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	c0008	2715	2	2	0	0	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	c0009	2715	1	1	0	0	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	c0010	2715	1	0	0	0	0	1	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	c0011	2715	1	0	1	0	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	c0012	2715	1	1	0	0	0	0	copy fasta	TCHHL1	chr1	152079141	152094064