JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TCHHL1_chr1_152079141_152094064	0/0	c0013	2715	1	1	0	0	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	c0014	2715	1	0	0	1	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	c0015	2715	1	1	0	0	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	c0016	2715	1	1	0	0	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	c0017	2715	1	0	1	0	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	c0018	2715	1	1	0	0	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	c0019	2715	1	0	0	1	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	c0020	2715	1	0	0	1	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHH_chr1_152101317_152120444	0/0	c0001	5850	18	5	3	9	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0002	5832	16	5	2	9	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0003	5802	15	0	11	4	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0004	5886	14	5	1	8	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0005	5814	13	0	3	8	0	2	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0006	5835	13	3	1	4	0	5	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0007	5796	12	1	1	8	2	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0008	5904	11	3	0	5	0	3	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0009	5850	11	0	2	6	1	2	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0010	5814	11	0	2	5	2	2	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0011	5868	9	0	2	6	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0012	5832	9	0	2	7	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0013	5868	8	2	0	5	1	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0014	5817	8	1	4	0	1	2	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0015	5904	7	0	4	3	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0016	5796	7	1	2	3	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0017	5922	6	2	0	3	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0018	5943	6	0	0	4	0	2	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0019	5889	6	0	1	4	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0020	5853	6	0	0	5	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0021	5886	5	4	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0022	5886	5	0	0	5	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0023	5871	5	1	1	3	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0024	5442	4	0	0	4	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0025	5793	4	0	2	0	0	2	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/1	c0026	5814	4	0	0	0	2	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0027	5796	4	0	4	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0028	5868	3	0	0	3	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0029	5850	3	0	0	3	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0030	5904	3	2	0	0	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0031	5868	3	1	2	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0032	5922	3	3	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0033	5940	3	0	0	2	1	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0034	5886	3	3	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0035	5868	3	3	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0036	5850	3	0	1	2	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0037	5925	3	0	0	3	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0038	5907	3	1	1	0	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0039	5802	2	0	0	2	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0040	5850	2	0	2	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0041	5832	2	2	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0042	5958	2	1	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444