JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TCHH_chr1_152101317_152120444	0/0	c0043	5940	2	2	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0044	5940	2	0	0	2	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0045	5904	2	2	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0046	5904	2	0	1	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0047	5868	2	0	1	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0048	5868	2	0	2	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0049	5868	2	0	1	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0050	5850	2	0	2	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0051	5796	2	0	0	2	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0052	5760	2	0	2	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0053	5778	2	0	1	0	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0054	5781	2	0	0	2	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0055	5979	2	0	0	2	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0056	5835	2	1	1	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0057	5799	2	0	2	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0058	5964	2	2	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0059	5886	2	2	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0060	5850	2	2	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0061	5961	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0062	5904	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0063	5796	1	0	0	0	1	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0064	5886	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0065	5832	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0066	5868	1	0	1	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0067	5922	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0068	5838	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0069	5886	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0070	5820	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0071	5850	1	0	0	0	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0072	5832	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0073	5832	1	0	0	0	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0074	5748	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0075	5796	1	0	1	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0076	5796	1	0	0	0	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0077	5829	1	0	1	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0078	5793	1	0	0	0	1	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0079	5832	1	0	0	0	1	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0080	5444	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0081	5444	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0082	5811	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0083	5793	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0084	5775	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0085	5793	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0086	5757	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0087	5863	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0088	5994	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0089	5994	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0090	5958	1	0	1	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0091	5976	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0092	5958	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444