JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TCHH_chr1_152101317_152120444	0/0	c0093	5961	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0094	5937	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0095	5904	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0096	5097	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0097	5904	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0098	5922	1	0	1	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0099	5922	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0100	5886	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0101	5886	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0102	5904	1	0	1	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0103	5904	1	0	1	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0104	5868	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0105	5868	1	0	0	0	1	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0106	5868	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0107	5886	1	0	1	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0108	5886	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0109	5889	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0110	5850	1	0	0	0	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0111	5850	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0112	5850	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0113	5850	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0114	5886	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0115	5886	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0116	5832	1	0	0	0	1	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0117	5832	1	0	1	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0118	5832	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0119	5850	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0120	5850	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0121	5868	1	0	0	0	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0122	5832	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0123	5814	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0124	5832	1	0	1	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0125	5850	1	0	0	0	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0126	5814	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0127	5814	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0128	5832	1	0	0	0	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0129	5760	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0130	5943	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0131	5724	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0132	5904	1	0	1	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0133	6015	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0134	5979	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0135	5907	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0136	5889	1	0	0	0	1	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0137	5871	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0138	5853	1	0	0	0	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0139	5835	1	0	0	0	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0140	5835	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0141	5817	1	0	0	0	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0142	5751	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444