JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TCHH_chr1_152101317_152120444	0/0	c0143	5727	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0144	5820	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0145	5907	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0146	5799	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	c0147	5904	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	1/0	c0148	5832	1	0	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHP_chr12_109895274_109923069	1/1	c0001	1497	196	27	41	79	15	32	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	c0002	1497	43	18	1	22	0	2	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	c0003	1497	41	26	5	6	0	4	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	c0004	1497	13	0	0	13	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	c0005	1497	12	4	7	0	1	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	c0006	1497	9	8	1	0	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	c0007	1497	3	2	1	0	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	c0008	1497	3	3	0	0	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	c0009	1497	2	0	0	2	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	c0010	1497	2	0	0	2	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	c0011	1497	2	0	2	0	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	c0012	1497	1	1	0	0	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	c0013	1497	1	0	0	1	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	c0014	1497	1	0	0	1	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	c0015	1497	1	0	0	1	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	c0016	1497	1	0	0	1	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	c0017	1497	1	1	0	0	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCIM_chr8_40148482_40160310	0/1	c0001	321	435	88	80	202	18	46	copy fasta	TCIM	chr8	40148482	40160310
TCIM_chr8_40148482_40160310	1/0	c0002	321	9	8	0	0	0	0	copy fasta	TCIM	chr8	40148482	40160310
TCIM_chr8_40148482_40160310	0/0	c0003	321	4	0	0	4	0	0	copy fasta	TCIM	chr8	40148482	40160310
TCIM_chr8_40148482_40160310	0/0	c0004	321	1	1	0	0	0	0	copy fasta	TCIM	chr8	40148482	40160310
TCIM_chr8_40148482_40160310	0/0	c0005	321	1	1	0	0	0	0	copy fasta	TCIM	chr8	40148482	40160310
TCIRG1_chr11_68034025_68055895	0/0	c0001	2493	317	64	59	139	15	40	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	c0002	2493	27	10	3	12	0	2	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	1/0	c0003	2493	11	10	0	0	0	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	c0004	2493	8	0	8	0	0	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	c0005	2493	4	0	0	4	0	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	c0006	2499	4	3	1	0	0	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	c0007	2493	3	0	2	0	1	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	c0008	2493	2	2	0	0	0	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	c0009	2493	1	1	0	0	0	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	c0010	2493	1	1	0	0	0	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	c0011	2493	1	0	0	0	0	1	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	c0012	2493	1	0	0	1	0	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	c0013	2493	1	0	0	1	0	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	c0014	2493	1	0	0	1	0	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	c0015	2493	1	0	0	0	0	1	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	c0016	2493	1	0	1	0	0	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	c0017	2493	1	0	0	1	0	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	c0018	2493	1	0	0	1	0	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	c0019	2493	1	1	0	0	0	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/1	c0020	2493	1	0	0	0	0	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCL1A_chr14_95704947_95719125	1/1	c0001	345	336	84	58	128	18	46	copy fasta	TCL1A	chr14	95704947	95719125
TCL1A_chr14_95704947_95719125	0/0	c0002	345	34	0	2	32	0	0	copy fasta	TCL1A	chr14	95704947	95719125