JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BAHD1_chr15_40435953_40473236	0/0	c0008	2343	1	0	1	0	0	0	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	c0009	2343	1	0	0	1	0	0	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	c0010	2343	1	0	1	0	0	0	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	c0011	2343	1	0	0	1	0	0	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	c0012	2343	1	0	0	1	0	0	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	c0013	2343	1	0	0	1	0	0	copy fasta	BAHD1	chr15	40435953	40473236
BAIAP2L1_chr7_98286650_98406090	1/0	c0001	1536	111	45	13	36	2	14	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	c0002	1536	89	20	14	42	3	10	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	c0003	1536	41	5	2	32	0	2	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/1	c0004	1536	23	1	11	0	5	5	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	c0005	1536	9	9	0	0	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	c0006	1536	8	0	0	8	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	c0007	1536	5	4	0	1	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	c0008	1536	2	2	0	0	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	c0009	1536	2	0	0	0	0	2	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	c0010	1536	2	2	0	0	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	c0011	1536	1	0	0	0	0	1	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	c0012	1536	1	0	1	0	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	c0013	1536	1	1	0	0	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	c0014	1536	1	1	0	0	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	c0015	1536	1	0	1	0	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	c0016	1536	1	0	0	1	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L2_chr22_38079900_38115684	0/0	c0001	1590	5	2	0	1	0	2	copy fasta	BAIAP2L2	chr22	38079900	38115684
BAIAP2L2_chr22_38079900_38115684	1/1	c0002	1590	4	0	1	0	0	1	copy fasta	BAIAP2L2	chr22	38079900	38115684
BAIAP2L2_chr22_38079900_38115684	0/0	c0003	1557	3	0	1	1	1	0	copy fasta	BAIAP2L2	chr22	38079900	38115684
BAIAP2L2_chr22_38079900_38115684	0/0	c0004	1599	2	0	2	0	0	0	copy fasta	BAIAP2L2	chr22	38079900	38115684
BAIAP2L2_chr22_38079900_38115684	0/0	c0005	1566	1	0	0	0	0	1	copy fasta	BAIAP2L2	chr22	38079900	38115684
BAIAP2L2_chr22_38079900_38115684	0/0	c0006	1590	1	0	1	0	0	0	copy fasta	BAIAP2L2	chr22	38079900	38115684
BAIAP2L2_chr22_38079900_38115684	0/0	c0007	1590	1	0	0	0	1	0	copy fasta	BAIAP2L2	chr22	38079900	38115684
BAIAP2L2_chr22_38079900_38115684	0/0	c0008	1590	1	0	1	0	0	0	copy fasta	BAIAP2L2	chr22	38079900	38115684
BAIAP2_chr17_81030151_81122434	1/1	c0001	1605	230	65	43	82	9	29	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	c0002	1605	65	6	25	26	1	7	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	c0003	1605	55	10	9	25	2	9	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	c0004	1605	5	4	1	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	c0005	1605	5	0	0	4	0	1	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	c0006	1605	3	2	1	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	c0007	1605	2	0	0	2	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	c0008	1605	2	2	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	c0009	1605	2	0	0	2	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	c0010	1605	1	1	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	c0011	1605	1	1	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	c0012	1605	1	0	0	1	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	c0013	1605	1	0	0	1	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	c0014	1605	1	0	1	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	c0015	1605	1	0	0	1	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	c0016	1605	1	1	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP3_chr16_1328645_1354439	0/0	c0001	3459	155	31	13	86	9	16	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0002	3459	95	12	34	26	7	16	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0003	3459	17	14	2	1	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0004	3459	13	3	0	9	0	1	copy fasta	BAIAP3	chr16	1328645	1354439