JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TCL1A_chr14_95704947_95719125	0/0	c0003	345	3	3	0	0	0	0	copy fasta	TCL1A	chr14	95704947	95719125
TCL1A_chr14_95704947_95719125	0/0	c0004	345	1	1	0	0	0	0	copy fasta	TCL1A	chr14	95704947	95719125
TCL1B_chr14_95681426_95697628	1/1	c0001	387	341	80	49	176	7	27	copy fasta	TCL1B	chr14	95681426	95697628
TCL1B_chr14_95681426_95697628	0/0	c0002	387	98	16	33	27	9	13	copy fasta	TCL1B	chr14	95681426	95697628
TCL1B_chr14_95681426_95697628	0/0	c0003	387	2	0	0	0	0	2	copy fasta	TCL1B	chr14	95681426	95697628
TCL1B_chr14_95681426_95697628	0/0	c0004	387	1	0	0	1	0	0	copy fasta	TCL1B	chr14	95681426	95697628
TCL1B_chr14_95681426_95697628	0/0	c0005	387	1	1	0	0	0	0	copy fasta	TCL1B	chr14	95681426	95697628
TCL1B_chr14_95681426_95697628	0/0	c0006	387	1	0	0	1	0	0	copy fasta	TCL1B	chr14	95681426	95697628
TCL1B_chr14_95681426_95697628	0/0	c0007	387	1	1	0	0	0	0	copy fasta	TCL1B	chr14	95681426	95697628
TCL1B_chr14_95681426_95697628	0/0	c0008	387	1	0	0	1	0	0	copy fasta	TCL1B	chr14	95681426	95697628
TCN1_chr11_59847808_59871487	1/1	c0001	1302	200	42	45	82	11	18	copy fasta	TCN1	chr11	59847808	59871487
TCN1_chr11_59847808_59871487	0/0	c0002	1302	108	46	13	34	2	13	copy fasta	TCN1	chr11	59847808	59871487
TCN1_chr11_59847808_59871487	0/0	c0003	1302	18	7	8	0	2	1	copy fasta	TCN1	chr11	59847808	59871487
TCN1_chr11_59847808_59871487	0/0	c0004	1302	4	0	2	0	2	0	copy fasta	TCN1	chr11	59847808	59871487
TCN1_chr11_59847808_59871487	0/0	c0005	1302	2	0	0	2	0	0	copy fasta	TCN1	chr11	59847808	59871487
TCN1_chr11_59847808_59871487	0/0	c0006	1302	2	2	0	0	0	0	copy fasta	TCN1	chr11	59847808	59871487
TCN1_chr11_59847808_59871487	0/0	c0007	1302	1	0	0	0	1	0	copy fasta	TCN1	chr11	59847808	59871487
TCN1_chr11_59847808_59871487	0/0	c0008	1302	1	1	0	0	0	0	copy fasta	TCN1	chr11	59847808	59871487
TCN2_chr22_30602174_30632271	0/0	c0001	1284	173	24	30	105	3	11	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	1/1	c0002	1284	155	1	22	97	6	27	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	c0003	1284	32	12	13	0	5	2	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	c0004	1284	26	23	2	0	0	1	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	c0005	1284	18	12	5	0	0	1	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	c0006	1284	10	5	2	1	0	2	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	c0007	1284	9	7	1	0	0	1	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	c0008	1284	8	0	0	8	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	c0009	1284	5	0	3	0	2	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	c0010	1284	5	0	5	0	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	c0011	1284	4	4	0	0	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	c0012	1284	4	4	0	0	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	c0013	1284	2	0	1	0	1	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	c0014	1284	2	2	0	0	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	c0015	1284	2	0	0	0	0	2	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	c0016	1284	2	0	0	2	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	c0017	1284	1	1	0	0	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	c0018	1284	1	0	0	1	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	c0019	1284	1	0	0	1	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	c0020	1284	1	0	0	1	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	c0021	1284	1	1	0	0	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	c0022	1284	1	0	0	1	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	c0023	1284	1	0	0	1	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	c0024	1284	1	0	0	0	1	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	c0025	1284	1	0	0	0	0	1	copy fasta	TCN2	chr22	30602174	30632271
TCOF1_chr5_150352697_150405293	1/0	c0001	4470	199	54	30	90	4	20	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0002	4470	51	5	7	24	3	12	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0003	4470	24	1	2	13	2	6	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0004	4470	24	12	3	5	2	2	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/1	c0005	4470	15	0	8	0	3	3	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0006	4470	4	4	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0007	4470	4	4	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293