JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TCOF1_chr5_150352697_150405293	0/0	c0008	4470	4	4	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0009	4470	3	0	1	0	1	1	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0010	4470	2	0	0	2	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0011	4470	2	0	2	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0012	4470	2	0	0	0	0	2	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0013	4470	2	0	0	2	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0014	4470	2	2	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0015	4470	2	2	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0016	4470	2	0	0	1	0	1	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0017	4470	2	2	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0018	4470	1	1	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0019	4470	1	1	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0020	4470	1	0	0	1	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0021	4470	1	0	0	0	1	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0022	4470	1	1	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0023	4470	1	0	0	1	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0024	4470	1	1	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0025	4470	1	1	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0026	4470	1	0	0	0	0	1	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0027	4470	1	0	0	0	0	1	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0028	4470	1	0	0	0	0	1	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0029	4470	1	1	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0030	4470	1	0	0	1	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0031	4470	1	0	1	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0032	4470	1	0	1	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0033	4470	1	1	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0034	4470	1	0	1	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	c0035	4470	1	1	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCP10L_chr21_32568721_32590523	1/1	c0001	648	198	29	44	95	6	22	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	c0002	648	101	8	23	51	4	15	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	c0003	648	80	41	10	17	4	8	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	c0004	648	4	4	0	0	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	c0005	648	4	4	0	0	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	c0006	648	3	2	0	0	0	1	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	c0007	648	1	0	0	1	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	c0008	648	1	1	0	0	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	c0009	648	1	0	0	1	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	c0010	648	1	0	0	1	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	c0011	703	1	0	1	0	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	c0012	648	1	1	0	0	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP11L1_chr11_33034572_33078550	0/0	c0001	1530	135	34	24	66	7	4	copy fasta	TCP11L1	chr11	33034572	33078550
TCP11L1_chr11_33034572_33078550	1/0	c0002	1530	113	36	26	33	4	13	copy fasta	TCP11L1	chr11	33034572	33078550
TCP11L1_chr11_33034572_33078550	0/0	c0003	1530	91	14	8	55	0	14	copy fasta	TCP11L1	chr11	33034572	33078550
TCP11L1_chr11_33034572_33078550	0/1	c0004	1530	19	5	5	2	3	3	copy fasta	TCP11L1	chr11	33034572	33078550
TCP11L1_chr11_33034572_33078550	0/0	c0005	1530	14	0	0	14	0	0	copy fasta	TCP11L1	chr11	33034572	33078550
TCP11L1_chr11_33034572_33078550	0/0	c0006	1530	5	0	3	0	0	2	copy fasta	TCP11L1	chr11	33034572	33078550
TCP11L1_chr11_33034572_33078550	0/0	c0007	1530	4	3	1	0	0	0	copy fasta	TCP11L1	chr11	33034572	33078550
TCP11L1_chr11_33034572_33078550	0/0	c0008	1530	3	0	1	0	2	0	copy fasta	TCP11L1	chr11	33034572	33078550
TCP11L1_chr11_33034572_33078550	0/0	c0009	1530	3	0	0	3	0	0	copy fasta	TCP11L1	chr11	33034572	33078550
TCP11L1_chr11_33034572_33078550	0/0	c0010	1530	2	0	0	2	0	0	copy fasta	TCP11L1	chr11	33034572	33078550