JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TCTE1_chr6_44273734_44302698	0/0	c0009	1506	2	2	0	0	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	c0010	1506	1	0	0	1	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	c0011	1506	1	1	0	0	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	c0012	1506	1	0	0	1	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	c0013	1506	1	0	0	0	0	1	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	c0014	1506	1	1	0	0	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	c0015	1506	1	0	0	1	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	c0016	1506	1	1	0	0	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	c0017	1506	1	0	1	0	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	c0018	1506	1	0	0	1	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	c0019	1506	1	0	0	1	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTN1_chr12_110609129_110654430	1/1	c0001	1779	259	73	53	85	16	30	copy fasta	TCTN1	chr12	110609129	110654430
TCTN1_chr12_110609129_110654430	0/0	c0002	1779	10	7	3	0	0	0	copy fasta	TCTN1	chr12	110609129	110654430
TCTN1_chr12_110609129_110654430	0/0	c0003	1779	5	0	2	1	0	2	copy fasta	TCTN1	chr12	110609129	110654430
TCTN1_chr12_110609129_110654430	0/0	c0004	1779	2	2	0	0	0	0	copy fasta	TCTN1	chr12	110609129	110654430
TCTN1_chr12_110609129_110654430	0/0	c0005	1779	2	0	2	0	0	0	copy fasta	TCTN1	chr12	110609129	110654430
TCTN1_chr12_110609129_110654430	0/0	c0006	1779	1	1	0	0	0	0	copy fasta	TCTN1	chr12	110609129	110654430
TCTN1_chr12_110609129_110654430	0/0	c0007	1779	1	1	0	0	0	0	copy fasta	TCTN1	chr12	110609129	110654430
TCTN1_chr12_110609129_110654430	0/0	c0008	1779	1	1	0	0	0	0	copy fasta	TCTN1	chr12	110609129	110654430
TCTN1_chr12_110609129_110654430	0/0	c0009	1779	1	0	1	0	0	0	copy fasta	TCTN1	chr12	110609129	110654430
TCTN1_chr12_110609129_110654430	0/0	c0010	1779	1	1	0	0	0	0	copy fasta	TCTN1	chr12	110609129	110654430
TCTN1_chr12_110609129_110654430	0/0	c0011	1779	1	0	1	0	0	0	copy fasta	TCTN1	chr12	110609129	110654430
TCTN2_chr12_123666113_123713399	0/0	c0001	2094	116	61	17	15	6	17	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	1/1	c0002	2094	87	12	20	30	10	13	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	c0003	2094	17	16	1	0	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	c0004	2094	4	0	2	0	0	2	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	c0005	2094	3	0	3	0	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	c0006	2094	2	0	0	0	2	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	c0007	2094	2	2	0	0	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	c0008	2094	2	0	2	0	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	c0009	2094	1	0	1	0	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	c0010	2094	1	0	0	1	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	c0011	2094	1	1	0	0	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN3_chr10_95658401_95698927	0/0	c0001	1824	166	26	22	101	4	13	copy fasta	TCTN3	chr10	95658401	95698927
TCTN3_chr10_95658401_95698927	1/1	c0002	1824	162	32	49	52	10	17	copy fasta	TCTN3	chr10	95658401	95698927
TCTN3_chr10_95658401_95698927	0/0	c0003	1824	39	10	3	18	3	5	copy fasta	TCTN3	chr10	95658401	95698927
TCTN3_chr10_95658401_95698927	0/0	c0004	1824	17	17	0	0	0	0	copy fasta	TCTN3	chr10	95658401	95698927
TCTN3_chr10_95658401_95698927	0/0	c0005	1824	7	0	2	4	0	1	copy fasta	TCTN3	chr10	95658401	95698927
TCTN3_chr10_95658401_95698927	0/0	c0006	1824	3	0	1	0	0	2	copy fasta	TCTN3	chr10	95658401	95698927
TCTN3_chr10_95658401_95698927	0/0	c0007	1824	2	1	1	0	0	0	copy fasta	TCTN3	chr10	95658401	95698927
TCTN3_chr10_95658401_95698927	0/0	c0008	1824	1	1	0	0	0	0	copy fasta	TCTN3	chr10	95658401	95698927
TCTN3_chr10_95658401_95698927	0/0	c0009	1824	1	0	0	0	1	0	copy fasta	TCTN3	chr10	95658401	95698927
TCTN3_chr10_95658401_95698927	0/0	c0010	1824	1	1	0	0	0	0	copy fasta	TCTN3	chr10	95658401	95698927
TCTN3_chr10_95658401_95698927	0/0	c0011	1824	1	0	0	1	0	0	copy fasta	TCTN3	chr10	95658401	95698927
TDGF1P3_chrX_110515896_110528021	1/1	c0001	567	247	59	41	110	11	24	copy fasta	TDGF1P3	chrX	110515896	110528021
TDGF1P3_chrX_110515896_110528021	0/0	c0002	567	17	15	2	0	0	0	copy fasta	TDGF1P3	chrX	110515896	110528021
TDGF1P3_chrX_110515896_110528021	0/0	c0003	567	1	0	0	1	0	0	copy fasta	TDGF1P3	chrX	110515896	110528021
TDGF1_chr3_46572788_46587457	1/1	c0001	567	219	39	37	117	6	18	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	c0002	567	141	46	24	42	8	21	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	c0003	567	56	2	10	35	1	8	copy fasta	TDGF1	chr3	46572788	46587457