JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TDGF1_chr3_46572788_46587457	0/0	c0004	567	14	1	0	12	1	0	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	c0005	567	5	0	0	5	0	0	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	c0006	567	5	4	1	0	0	0	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	c0007	567	2	0	2	0	0	0	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	c0008	567	1	0	0	0	0	1	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	c0009	567	1	0	0	1	0	0	copy fasta	TDGF1	chr3	46572788	46587457
TDG_chr12_103960872_103993874	1/1	c0001	1233	289	77	55	95	13	47	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	c0002	1233	78	1	11	61	2	3	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	c0003	1233	60	11	6	41	2	0	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	c0004	1233	7	0	0	7	0	0	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	c0005	1233	4	4	0	0	0	0	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	c0006	1233	3	3	0	0	0	0	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	c0007	1233	1	0	0	1	0	0	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	c0008	1233	1	0	0	1	0	0	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	c0009	1233	1	0	0	0	1	0	copy fasta	TDG	chr12	103960872	103993874
TDO2_chr4_155898696_155925406	0/1	c0001	1221	365	88	74	144	15	43	copy fasta	TDO2	chr4	155898696	155925406
TDO2_chr4_155898696_155925406	0/0	c0002	1221	2	0	0	2	0	0	copy fasta	TDO2	chr4	155898696	155925406
TDO2_chr4_155898696_155925406	0/0	c0003	1221	2	0	0	0	1	1	copy fasta	TDO2	chr4	155898696	155925406
TDO2_chr4_155898696_155925406	0/0	c0004	1221	2	0	0	0	0	2	copy fasta	TDO2	chr4	155898696	155925406
TDO2_chr4_155898696_155925406	0/0	c0005	1221	2	0	2	0	0	0	copy fasta	TDO2	chr4	155898696	155925406
TDO2_chr4_155898696_155925406	0/0	c0006	1221	1	1	0	0	0	0	copy fasta	TDO2	chr4	155898696	155925406
TDO2_chr4_155898696_155925406	0/0	c0007	1221	1	1	0	0	0	0	copy fasta	TDO2	chr4	155898696	155925406
TDO2_chr4_155898696_155925406	0/0	c0008	1221	1	1	0	0	0	0	copy fasta	TDO2	chr4	155898696	155925406
TDO2_chr4_155898696_155925406	0/0	c0009	1221	1	1	0	0	0	0	copy fasta	TDO2	chr4	155898696	155925406
TDP1_chr14_89950927_90049764	1/1	c0001	1827	150	15	39	74	3	17	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	c0002	1827	44	29	5	5	1	4	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	c0003	1827	20	13	0	4	0	3	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	c0004	1827	14	11	3	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	c0005	1827	14	14	0	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	c0006	1827	8	8	0	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	c0007	1827	6	0	6	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	c0008	1827	3	3	0	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	c0009	1827	1	1	0	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	c0010	1827	1	0	1	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	c0011	1827	1	1	0	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	c0012	1827	1	1	0	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	c0013	1827	1	0	0	1	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP2_chr6_24644979_24671899	0/1	c0001	1089	192	41	42	77	12	19	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	c0002	1089	133	38	19	70	0	6	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	1/0	c0003	1089	63	5	8	30	5	14	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	c0004	1089	16	4	3	9	0	0	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	c0005	1089	5	0	3	0	1	1	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	c0006	1089	3	3	0	0	0	0	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	c0007	1089	1	1	0	0	0	0	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	c0008	1089	1	0	0	1	0	0	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	c0009	1089	1	1	0	0	0	0	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	c0010	1089	1	0	0	1	0	0	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	c0011	1089	1	1	0	0	0	0	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	c0012	1089	1	0	1	0	0	0	copy fasta	TDP2	chr6	24644979	24671899
TDRD10_chr1_154497219_154553147	0/0	c0001	1056	193	40	38	91	3	21	copy fasta	TDRD10	chr1	154497219	154553147