JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TDRD10_chr1_154497219_154553147	0/0	c0002	1056	74	11	14	36	2	11	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	1/0	c0003	1056	29	28	0	0	0	0	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	0/1	c0004	1056	25	0	12	5	5	2	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	0/0	c0005	1056	7	7	0	0	0	0	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	0/0	c0006	1056	1	0	0	1	0	0	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	0/0	c0007	1056	1	0	0	1	0	0	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	0/0	c0008	1056	1	1	0	0	0	0	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	0/0	c0009	1056	1	1	0	0	0	0	copy fasta	TDRD10	chr1	154497219	154553147
TDRD12_chr19_32714767_32834580	0/0	c0001	3993	112	17	10	72	4	9	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	1/1	c0002	3993	85	18	18	29	4	14	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0003	3993	85	13	9	57	0	6	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0004	3993	24	19	0	0	0	5	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0005	3993	11	0	1	10	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0006	3993	8	1	1	1	1	4	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0007	3993	7	7	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0008	3993	5	0	0	5	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0009	3993	4	0	2	0	1	1	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0010	3993	4	0	3	0	0	1	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0011	3993	4	0	0	4	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0012	3993	4	0	0	4	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0013	3993	3	3	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0014	3993	2	0	0	2	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0015	3993	2	2	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0016	3993	2	0	2	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0017	3993	2	2	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0018	3993	1	0	0	0	0	1	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0019	3993	1	0	0	1	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0020	3993	1	1	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0021	3993	1	1	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0022	3993	1	0	0	1	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0023	3993	1	1	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0024	3993	1	0	0	0	0	1	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0025	3993	1	0	0	1	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0026	3993	1	0	0	1	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0027	3993	1	1	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0028	3993	1	0	1	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0029	4013	1	0	0	1	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0030	3993	1	0	0	1	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0031	3993	1	0	1	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0032	3993	1	1	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	c0033	3993	1	1	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD15_chr2_21118968_21149368	0/1	c0001	5805	174	33	22	95	5	18	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	1/0	c0002	5805	146	45	31	48	7	14	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	c0003	5805	4	4	0	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	c0004	5805	3	3	0	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	c0005	5805	3	0	0	3	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	c0006	5805	2	1	1	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	c0007	5805	2	0	0	2	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	c0008	5805	2	0	2	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	c0009	5805	1	0	0	1	0	0	copy fasta	TDRD15	chr2	21118968	21149368