JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TDRD5_chr1_179586832_179696272	0/0	c0011	3108	4	4	0	0	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	c0012	3108	3	0	3	0	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	c0013	3108	3	2	1	0	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	c0014	3108	2	2	0	0	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	c0015	3108	2	0	0	0	2	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	c0016	3108	2	2	0	0	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	c0017	3108	1	0	0	1	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	c0018	3108	1	0	0	0	0	1	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	c0019	3108	1	0	1	0	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	c0020	3108	1	0	0	1	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	c0021	3108	1	0	0	1	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	c0022	3108	1	1	0	0	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	c0023	3108	1	1	0	0	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	c0024	3108	1	0	0	1	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD6_chr6_46682885_46709319	0/0	c0001	6291	126	37	25	54	4	6	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0002	6291	102	14	17	50	6	15	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0003	6291	42	2	16	18	3	3	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0004	6291	38	1	13	15	0	9	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0005	6291	16	0	0	16	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0006	6291	15	15	0	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0007	6291	11	6	2	0	1	2	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0008	6291	6	0	0	6	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0009	6291	6	0	0	0	2	4	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0010	6291	5	0	0	5	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0011	6291	4	0	0	4	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0012	6291	4	0	0	4	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0013	6291	3	3	0	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0014	6291	3	0	0	3	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0015	6291	2	2	0	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0016	6291	2	0	0	2	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0017	6291	2	0	0	2	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0018	6291	2	0	0	0	0	2	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0019	6291	2	0	0	0	0	2	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0020	6291	1	0	0	1	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0021	6291	1	0	0	1	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0022	6291	1	1	0	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0023	6291	1	1	0	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0024	6291	1	1	0	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0025	6291	1	0	1	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0026	6291	1	0	0	1	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0027	6291	1	1	0	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0028	6291	1	1	0	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0029	6291	1	1	0	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0030	6291	1	1	0	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0031	6291	1	0	0	1	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0032	6291	1	0	0	1	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0033	6291	1	0	0	1	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0034	6291	1	0	0	0	0	1	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0035	6291	1	0	0	0	0	1	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0036	6291	1	0	0	0	0	1	copy fasta	TDRD6	chr6	46682885	46709319