JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TDRD6_chr6_46682885_46709319	0/0	c0037	6291	1	1	0	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	c0038	6291	1	0	0	1	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD7_chr9_97407096_97501125	0/0	c0001	3297	156	35	35	67	2	17	copy fasta	TDRD7	chr9	97407096	97501125
TDRD7_chr9_97407096_97501125	1/1	c0002	3297	152	32	31	66	3	18	copy fasta	TDRD7	chr9	97407096	97501125
TDRD7_chr9_97407096_97501125	0/0	c0003	3297	18	1	0	16	0	1	copy fasta	TDRD7	chr9	97407096	97501125
TDRD7_chr9_97407096_97501125	0/0	c0004	3297	12	7	3	0	0	2	copy fasta	TDRD7	chr9	97407096	97501125
TDRD7_chr9_97407096_97501125	0/0	c0005	3297	4	4	0	0	0	0	copy fasta	TDRD7	chr9	97407096	97501125
TDRD7_chr9_97407096_97501125	0/0	c0006	3297	3	3	0	0	0	0	copy fasta	TDRD7	chr9	97407096	97501125
TDRD7_chr9_97407096_97501125	0/0	c0007	3297	2	0	0	2	0	0	copy fasta	TDRD7	chr9	97407096	97501125
TDRD7_chr9_97407096_97501125	0/0	c0008	3297	1	0	0	0	1	0	copy fasta	TDRD7	chr9	97407096	97501125
TDRD7_chr9_97407096_97501125	0/0	c0009	3297	1	1	0	0	0	0	copy fasta	TDRD7	chr9	97407096	97501125
TDRD7_chr9_97407096_97501125	0/0	c0010	3297	1	0	0	1	0	0	copy fasta	TDRD7	chr9	97407096	97501125
TDRD7_chr9_97407096_97501125	0/0	c0011	3297	1	1	0	0	0	0	copy fasta	TDRD7	chr9	97407096	97501125
TDRD7_chr9_97407096_97501125	0/0	c0012	3297	1	0	0	1	0	0	copy fasta	TDRD7	chr9	97407096	97501125
TDRD7_chr9_97407096_97501125	0/0	c0013	3297	1	0	1	0	0	0	copy fasta	TDRD7	chr9	97407096	97501125
TDRD7_chr9_97407096_97501125	0/0	c0014	3297	1	1	0	0	0	0	copy fasta	TDRD7	chr9	97407096	97501125
TDRD7_chr9_97407096_97501125	0/0	c0015	3297	1	1	0	0	0	0	copy fasta	TDRD7	chr9	97407096	97501125
TDRD7_chr9_97407096_97501125	0/0	c0016	3297	1	0	0	1	0	0	copy fasta	TDRD7	chr9	97407096	97501125
TDRD9_chr14_103923456_104057667	0/1	c0001	4149	183	35	33	87	8	19	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	c0002	4149	93	20	20	38	7	8	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	c0003	4149	34	3	13	18	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	c0004	4149	12	11	1	0	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	c0005	4149	6	0	0	6	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	1/0	c0006	4149	5	2	2	0	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	c0007	4149	4	0	0	4	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	c0008	4149	4	3	1	0	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	c0009	4149	3	1	0	2	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	c0010	4149	3	0	0	1	0	2	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	c0011	4149	3	0	1	0	2	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	c0012	4149	3	3	0	0	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	c0013	4149	2	0	0	2	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	c0014	4149	2	2	0	0	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	c0015	4149	2	2	0	0	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	c0016	4149	2	2	0	0	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	c0017	4149	1	0	0	0	0	1	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	c0018	4149	1	0	0	0	0	1	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	c0019	4149	1	0	0	1	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	c0020	4149	1	0	0	0	1	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	c0021	4149	1	1	0	0	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	c0022	4149	1	0	0	1	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	c0023	4149	1	1	0	0	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	c0024	4149	1	0	0	0	0	1	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	c0025	4149	1	0	0	1	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	c0026	4149	1	0	1	0	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	c0027	4149	1	0	0	1	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRKH_chr1_151768494_151795500	1/0	c0001	1686	317	88	58	123	11	36	copy fasta	TDRKH	chr1	151768494	151795500
TDRKH_chr1_151768494_151795500	0/1	c0002	1686	92	7	16	55	7	6	copy fasta	TDRKH	chr1	151768494	151795500
TDRKH_chr1_151768494_151795500	0/0	c0003	1686	3	0	0	3	0	0	copy fasta	TDRKH	chr1	151768494	151795500
TDRKH_chr1_151768494_151795500	0/0	c0004	1686	1	0	0	1	0	0	copy fasta	TDRKH	chr1	151768494	151795500
TDRKH_chr1_151768494_151795500	0/0	c0005	1686	1	0	0	0	0	1	copy fasta	TDRKH	chr1	151768494	151795500