JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TDRKH_chr1_151768494_151795500	0/0	c0006	1639	1	0	0	1	0	0	copy fasta	TDRKH	chr1	151768494	151795500
TDRKH_chr1_151768494_151795500	0/0	c0007	1686	1	0	0	1	0	0	copy fasta	TDRKH	chr1	151768494	151795500
TDRKH_chr1_151768494_151795500	0/0	c0008	1686	1	1	0	0	0	0	copy fasta	TDRKH	chr1	151768494	151795500
TDRKH_chr1_151768494_151795500	0/0	c0009	1686	1	0	0	0	0	1	copy fasta	TDRKH	chr1	151768494	151795500
TDRP_chr8_484946_549834	1/1	c0001	558	298	81	57	119	8	31	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	c0002	552	120	6	23	74	6	11	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	c0003	558	11	0	0	11	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	c0004	558	10	9	1	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	c0005	558	2	0	0	0	2	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	c0006	558	1	0	1	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	c0007	558	1	1	0	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	c0008	558	1	1	0	0	0	0	copy fasta	TDRP	chr8	484946	549834
TEAD1_chr11_12669421_12949737	1/1	c0001	1281	126	61	32	12	4	15	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	c0002	1281	76	15	11	41	2	7	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	c0003	1281	2	2	0	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	c0004	1281	1	0	1	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	c0005	1281	1	0	0	1	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD2_chr19_49335595_49367416	1/1	c0001	1356	341	85	64	148	12	30	copy fasta	TEAD2	chr19	49335595	49367416
TEAD2_chr19_49335595_49367416	0/0	c0002	1356	5	0	0	5	0	0	copy fasta	TEAD2	chr19	49335595	49367416
TEAD2_chr19_49335595_49367416	0/0	c0003	1356	2	2	0	0	0	0	copy fasta	TEAD2	chr19	49335595	49367416
TEAD2_chr19_49335595_49367416	0/0	c0004	1356	2	2	0	0	0	0	copy fasta	TEAD2	chr19	49335595	49367416
TEAD2_chr19_49335595_49367416	0/0	c0005	1356	1	1	0	0	0	0	copy fasta	TEAD2	chr19	49335595	49367416
TEAD2_chr19_49335595_49367416	0/0	c0006	1368	1	1	0	0	0	0	copy fasta	TEAD2	chr19	49335595	49367416
TEAD2_chr19_49335595_49367416	0/0	c0007	1356	1	0	0	1	0	0	copy fasta	TEAD2	chr19	49335595	49367416
TEAD2_chr19_49335595_49367416	0/0	c0008	1356	1	0	0	0	0	1	copy fasta	TEAD2	chr19	49335595	49367416
TEAD2_chr19_49335595_49367416	0/0	c0009	1356	1	1	0	0	0	0	copy fasta	TEAD2	chr19	49335595	49367416
TEAD2_chr19_49335595_49367416	0/0	c0010	1356	1	0	0	0	0	1	copy fasta	TEAD2	chr19	49335595	49367416
TEAD3_chr6_35468597_35502079	1/1	c0001	1308	310	40	55	158	13	42	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	c0002	1308	51	25	6	19	0	1	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	c0003	1308	23	17	3	0	1	2	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	c0004	1308	4	2	1	0	0	1	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	c0005	1308	1	0	0	1	0	0	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	c0006	1308	1	0	1	0	0	0	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	c0007	1308	1	0	0	0	0	1	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	c0008	1308	1	0	0	0	0	1	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	c0009	1308	1	0	0	1	0	0	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	c0010	1339	1	0	0	1	0	0	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	c0011	1308	1	0	0	1	0	0	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	c0012	1308	1	0	0	1	0	0	copy fasta	TEAD3	chr6	35468597	35502079
TEAD4_chr12_2954397_3045676	1/1	c0001	1305	264	89	61	70	11	31	copy fasta	TEAD4	chr12	2954397	3045676
TEAD4_chr12_2954397_3045676	0/0	c0002	1305	6	0	5	0	1	0	copy fasta	TEAD4	chr12	2954397	3045676
TEAD4_chr12_2954397_3045676	0/0	c0003	1305	1	1	0	0	0	0	copy fasta	TEAD4	chr12	2954397	3045676
TEAD4_chr12_2954397_3045676	0/0	c0004	1305	1	0	1	0	0	0	copy fasta	TEAD4	chr12	2954397	3045676
TEAD4_chr12_2954397_3045676	0/0	c0005	1305	1	0	0	1	0	0	copy fasta	TEAD4	chr12	2954397	3045676
TEAD4_chr12_2954397_3045676	0/0	c0006	1305	1	0	0	0	0	1	copy fasta	TEAD4	chr12	2954397	3045676
TEAD4_chr12_2954397_3045676	0/0	c0007	1305	1	0	1	0	0	0	copy fasta	TEAD4	chr12	2954397	3045676
TEAD4_chr12_2954397_3045676	0/0	c0008	1305	1	0	0	1	0	0	copy fasta	TEAD4	chr12	2954397	3045676
TECPR1_chr7_98209624_98257232	1/1	c0001	3498	133	44	20	48	7	12	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0002	3498	66	12	15	38	0	1	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0003	3498	56	7	10	30	1	8	copy fasta	TECPR1	chr7	98209624	98257232