JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BAIAP3_chr16_1328645_1354439	0/0	c0005	3459	12	6	3	0	0	3	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	1/0	c0006	3459	11	2	3	0	0	5	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0007	3459	7	0	1	2	1	3	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0008	3459	4	4	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/1	c0009	3459	4	0	3	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0010	3459	4	3	0	0	0	1	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0011	3459	3	3	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0012	3459	2	2	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0013	3459	2	0	2	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0014	3459	2	0	1	0	0	1	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0015	3459	2	2	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0016	3459	2	0	0	2	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0017	3459	2	0	2	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0018	3459	2	2	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0019	3459	1	0	1	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0020	3459	1	0	0	1	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0021	3459	1	1	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0022	3459	1	1	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0023	3459	1	0	0	0	1	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0024	3459	1	0	0	1	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0025	3459	1	1	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0026	3459	1	0	0	1	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0027	3459	1	0	1	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0028	3459	1	1	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0029	3459	1	0	0	1	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0030	3459	1	0	0	1	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0031	3459	1	0	0	1	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0032	3459	1	1	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0033	3459	1	1	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0034	3459	1	0	1	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0035	3453	1	0	1	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0036	3459	1	1	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	c0037	3459	1	1	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAK1_chr6_33567552_33585276	1/1	c0001	636	396	85	64	189	15	41	copy fasta	BAK1	chr6	33567552	33585276
BAK1_chr6_33567552_33585276	0/0	c0002	636	19	0	14	1	3	1	copy fasta	BAK1	chr6	33567552	33585276
BAK1_chr6_33567552_33585276	0/0	c0003	636	15	11	0	2	0	2	copy fasta	BAK1	chr6	33567552	33585276
BAK1_chr6_33567552_33585276	0/0	c0004	636	4	0	0	4	0	0	copy fasta	BAK1	chr6	33567552	33585276
BAMBI_chr10_28672521_28687932	1/1	c0001	783	405	84	76	182	16	45	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	c0002	783	12	0	0	12	0	0	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	c0003	783	10	9	1	0	0	0	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	c0004	783	5	5	0	0	0	0	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	c0005	783	2	0	0	2	0	0	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	c0006	783	1	0	1	0	0	0	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	c0007	783	1	0	0	0	0	1	copy fasta	BAMBI	chr10	28672521	28687932
BANF1_chr11_65997503_66009149	1/1	c0001	270	373	91	56	168	12	44	copy fasta	BANF1	chr11	65997503	66009149
BANF1_chr11_65997503_66009149	0/0	c0002	270	1	1	0	0	0	0	copy fasta	BANF1	chr11	65997503	66009149
BANF2_chr20_17694966_17740871	0/1	c0001	273	236	36	58	102	13	26	copy fasta	BANF2	chr20	17694966	17740871
BANF2_chr20_17694966_17740871	0/0	c0002	273	140	41	13	65	5	16	copy fasta	BANF2	chr20	17694966	17740871
BANF2_chr20_17694966_17740871	0/0	c0003	273	9	8	1	0	0	0	copy fasta	BANF2	chr20	17694966	17740871
BANF2_chr20_17694966_17740871	1/0	c0004	273	7	1	1	4	0	0	copy fasta	BANF2	chr20	17694966	17740871