JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TECPR1_chr7_98209624_98257232	0/0	c0004	3498	26	1	3	15	1	6	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0005	3498	13	0	0	13	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0006	3498	6	6	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0007	3498	6	3	0	1	2	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0008	3498	5	3	0	0	0	2	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0009	3498	4	4	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0010	3498	3	1	2	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0011	3498	2	2	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0012	3498	2	0	0	2	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0013	3498	2	2	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0014	3498	2	0	0	2	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0015	3498	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0016	3498	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0017	3498	1	0	0	0	1	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0018	3498	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0019	3498	1	1	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0020	3498	1	0	1	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0021	3498	1	0	0	0	0	1	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0022	3498	1	0	0	0	0	1	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0023	3498	1	0	1	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0024	3498	1	1	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0025	3498	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0026	3498	1	0	0	0	0	1	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0027	3498	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0028	3498	1	0	0	0	0	1	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0029	3498	1	0	0	0	0	1	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0030	3498	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0031	3498	1	1	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0032	3498	1	1	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0033	3498	1	1	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	c0034	3498	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR2_chr14_102357941_102507477	0/1	c0001	4236	138	34	22	50	10	21	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	c0002	4236	70	9	17	27	6	11	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	1/0	c0003	4236	46	0	9	35	0	1	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	c0004	4236	18	2	2	11	0	3	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	c0005	4236	16	14	0	0	2	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	c0006	4236	13	12	1	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	c0007	4236	6	0	0	5	0	1	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	c0008	4236	5	0	3	0	0	2	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	c0009	4236	2	0	0	2	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	c0010	4236	2	0	1	0	0	1	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	c0011	4236	2	0	2	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	c0012	4236	2	2	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	c0013	4236	2	0	0	2	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	c0014	4236	1	1	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	c0015	4236	1	1	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	c0016	4236	1	1	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	c0017	4236	1	0	1	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	c0018	4236	1	1	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	c0019	4236	1	1	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477