JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TECPR2_chr14_102357941_102507477	0/0	c0020	4236	1	0	0	1	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	c0021	4236	1	0	1	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	c0022	4236	1	1	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	c0023	4236	1	0	0	1	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	c0024	4236	1	0	1	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	c0025	4236	1	1	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECRL_chr4_64272702_64414450	1/1	c0001	1092	249	65	64	85	8	25	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	c0002	1092	17	15	1	0	0	1	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	c0003	1092	2	2	0	0	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	c0004	1092	2	0	0	2	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	c0005	1092	1	0	1	0	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	c0006	1092	1	0	0	1	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECR_chr19_14524594_14570980	1/1	c0001	927	271	49	78	94	14	34	copy fasta	TECR	chr19	14524594	14570980
TECR_chr19_14524594_14570980	0/0	c0002	927	30	22	1	2	1	4	copy fasta	TECR	chr19	14524594	14570980
TECR_chr19_14524594_14570980	0/0	c0003	927	15	15	0	0	0	0	copy fasta	TECR	chr19	14524594	14570980
TECR_chr19_14524594_14570980	0/0	c0004	928	6	0	2	3	0	1	copy fasta	TECR	chr19	14524594	14570980
TECR_chr19_14524594_14570980	0/0	c0005	927	6	6	0	0	0	0	copy fasta	TECR	chr19	14524594	14570980
TECR_chr19_14524594_14570980	0/0	c0006	928	3	0	1	0	1	1	copy fasta	TECR	chr19	14524594	14570980
TECR_chr19_14524594_14570980	0/0	c0007	927	1	0	0	1	0	0	copy fasta	TECR	chr19	14524594	14570980
TECTA_chr11_121096243_121196490	0/1	c0001	6468	70	2	12	44	3	8	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0002	6468	49	2	14	25	1	7	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0003	6468	47	0	6	36	0	5	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0004	6468	42	25	12	0	3	2	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0005	6468	40	6	10	18	2	4	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0006	6468	11	0	1	5	0	5	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0007	6468	9	6	2	1	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0008	6468	8	8	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0009	6468	4	0	0	4	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0010	6468	3	0	0	3	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0011	6468	3	3	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0012	6468	3	0	0	3	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0013	6468	2	0	0	0	0	2	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0014	6468	2	2	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0015	6468	2	2	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0016	6468	2	2	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0017	6468	2	0	0	0	2	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0018	6468	2	2	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0019	6468	2	2	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0020	6468	2	2	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0021	6468	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0022	6468	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0023	6468	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0024	6468	1	0	1	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0025	6468	1	0	0	1	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0026	6468	1	0	0	1	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0027	6468	1	0	0	0	0	1	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	1/0	c0028	6468	1	0	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0029	6468	1	0	0	1	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0030	6468	1	0	0	0	0	1	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0031	6468	1	0	0	0	1	0	copy fasta	TECTA	chr11	121096243	121196490