JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TECTA_chr11_121096243_121196490	0/0	c0032	6468	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0033	6468	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0034	6468	1	0	0	1	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0035	6468	1	0	0	0	0	1	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0036	6468	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0037	6468	1	0	0	1	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0038	6468	1	0	0	1	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0039	6468	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0040	6468	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0041	6468	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0042	6468	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0043	6468	1	0	1	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0044	6468	1	0	0	0	0	1	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0045	6468	1	0	1	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0046	6468	1	0	0	1	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0047	6468	1	0	0	1	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0048	6468	1	0	1	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0049	6468	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0050	6468	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0051	6468	1	0	1	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0052	6468	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0053	6468	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0054	6468	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0055	6468	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0056	6468	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0057	6468	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0058	6468	1	0	0	1	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0059	6468	1	0	1	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0060	6468	1	0	0	0	0	1	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0061	6468	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0062	6468	1	0	1	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	c0063	6468	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTB_chr10_112278400_112310038	0/0	c0001	990	264	57	40	138	8	21	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	1/1	c0002	990	161	42	34	52	6	25	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	c0003	990	2	0	0	0	0	2	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	c0004	990	2	0	2	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	c0005	990	2	0	0	2	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	c0006	990	1	0	0	1	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	c0007	990	1	0	0	1	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	c0008	990	1	0	1	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	c0009	990	1	0	0	1	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	c0010	990	1	1	0	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	c0011	990	1	0	0	1	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	c0012	990	1	0	1	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TEC_chr4_48130783_48274838	0/1	c0001	1896	217	28	28	132	9	19	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	1/0	c0002	1896	64	31	11	12	2	7	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	c0003	1896	44	14	20	1	4	5	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	c0004	1896	9	6	1	0	0	2	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	c0005	1896	4	4	0	0	0	0	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	c0006	1896	2	0	0	2	0	0	copy fasta	TEC	chr4	48130783	48274838