JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TEC_chr4_48130783_48274838	0/0	c0007	1896	1	0	0	0	1	0	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	c0008	1896	1	1	0	0	0	0	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	c0009	1896	1	0	0	1	0	0	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	c0010	1896	1	0	0	0	0	1	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	c0011	1896	1	0	1	0	0	0	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	c0012	1896	1	0	1	0	0	0	copy fasta	TEC	chr4	48130783	48274838
TEDC1_chr14_105486246_105504248	0/1	c0001	1488	309	37	64	152	16	39	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	1/0	c0002	1488	24	19	4	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0003	1489	22	0	5	12	0	5	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0004	1488	21	19	2	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0005	1488	21	0	0	21	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0006	1488	6	5	1	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0007	1488	4	3	1	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0008	1488	2	1	1	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0009	1488	2	0	1	0	0	1	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0010	1489	2	0	0	2	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0011	1489	2	2	0	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0012	1488	1	0	1	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0013	1488	1	0	0	1	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0014	1489	1	0	1	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0015	1488	1	1	0	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0016	1488	1	0	1	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0017	1488	1	1	0	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0018	1488	1	0	0	1	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0019	1488	1	0	0	1	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0020	1489	1	1	0	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0021	1488	1	1	0	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0022	1489	1	1	0	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0023	1488	1	0	0	1	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0024	1488	1	1	0	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0025	1488	1	0	0	0	0	1	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0026	1488	1	0	0	1	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0027	1489	1	0	0	1	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0028	1488	1	0	0	1	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0029	1488	1	1	0	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0030	1488	1	1	0	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0031	1488	1	1	0	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	c0032	1488	1	1	0	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC2_chr16_2455109_2469963	1/1	c0001	1302	251	92	46	65	10	36	copy fasta	TEDC2	chr16	2455109	2469963
TEDC2_chr16_2455109_2469963	0/0	c0002	1302	115	0	19	83	4	9	copy fasta	TEDC2	chr16	2455109	2469963
TEDC2_chr16_2455109_2469963	0/0	c0003	1302	3	0	0	3	0	0	copy fasta	TEDC2	chr16	2455109	2469963
TEDC2_chr16_2455109_2469963	0/0	c0004	1302	2	2	0	0	0	0	copy fasta	TEDC2	chr16	2455109	2469963
TEDC2_chr16_2455109_2469963	0/0	c0005	1302	1	0	1	0	0	0	copy fasta	TEDC2	chr16	2455109	2469963
TEDC2_chr16_2455109_2469963	0/0	c0006	1302	1	0	0	1	0	0	copy fasta	TEDC2	chr16	2455109	2469963
TEDC2_chr16_2455109_2469963	0/0	c0007	1317	1	0	1	0	0	0	copy fasta	TEDC2	chr16	2455109	2469963
TEDC2_chr16_2455109_2469963	0/0	c0008	1302	1	0	0	0	0	1	copy fasta	TEDC2	chr16	2455109	2469963
TEDC2_chr16_2455109_2469963	0/0	c0009	1302	1	0	0	1	0	0	copy fasta	TEDC2	chr16	2455109	2469963
TEDC2_chr16_2455109_2469963	0/0	c0010	1302	1	0	1	0	0	0	copy fasta	TEDC2	chr16	2455109	2469963
TEDC2_chr16_2455109_2469963	0/0	c0011	1302	1	0	0	1	0	0	copy fasta	TEDC2	chr16	2455109	2469963
TEDDM1_chr1_182393117_182405667	0/0	c0001	822	302	76	40	148	8	30	copy fasta	TEDDM1	chr1	182393117	182405667