JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TEDDM1_chr1_182393117_182405667	1/1	c0002	822	59	3	10	37	1	6	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	c0003	822	54	14	21	7	5	7	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	c0004	822	1	1	0	0	0	0	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	c0005	822	1	0	0	0	0	1	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	c0006	822	1	0	1	0	0	0	copy fasta	TEDDM1	chr1	182393117	182405667
TEFM_chr17_30893986_30911238	1/1	c0001	1083	282	73	62	106	14	25	copy fasta	TEFM	chr17	30893986	30911238
TEFM_chr17_30893986_30911238	0/0	c0002	1083	70	7	11	40	0	12	copy fasta	TEFM	chr17	30893986	30911238
TEFM_chr17_30893986_30911238	0/0	c0003	1083	7	7	0	0	0	0	copy fasta	TEFM	chr17	30893986	30911238
TEFM_chr17_30893986_30911238	0/0	c0004	1083	2	0	0	0	0	2	copy fasta	TEFM	chr17	30893986	30911238
TEFM_chr17_30893986_30911238	0/0	c0005	1083	1	0	0	0	0	1	copy fasta	TEFM	chr17	30893986	30911238
TEFM_chr17_30893986_30911238	0/0	c0006	1083	1	0	1	0	0	0	copy fasta	TEFM	chr17	30893986	30911238
TEFM_chr17_30893986_30911238	0/0	c0007	1083	1	1	0	0	0	0	copy fasta	TEFM	chr17	30893986	30911238
TEF_chr22_41376942_41404326	1/0	c0001	912	320	87	31	157	14	30	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/1	c0002	912	64	3	23	15	4	18	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	c0003	912	2	0	2	0	0	0	copy fasta	TEF	chr22	41376942	41404326
TEKT1_chr17_6792993_6836729	1/0	c0001	1257	144	6	42	61	12	22	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	c0002	1257	89	49	9	24	2	5	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	c0003	1257	82	6	13	53	3	7	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	c0004	1257	27	27	0	0	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/1	c0005	1257	15	0	1	8	0	5	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	c0006	1257	13	0	4	9	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	c0007	1257	11	3	6	0	0	2	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	c0008	1257	9	0	0	8	0	1	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	c0009	1257	3	0	1	0	0	2	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	c0010	1257	3	0	0	3	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	c0011	1257	2	0	1	0	1	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	c0012	1257	2	2	0	0	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	c0013	1257	1	0	0	1	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	c0014	1257	1	0	1	0	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	c0015	1257	1	1	0	0	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	c0016	1257	1	0	0	1	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	c0017	1257	1	1	0	0	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	c0018	1257	1	1	0	0	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT2_chr1_36079094_36093275	0/1	c0001	1293	327	75	61	155	10	25	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	c0002	1293	51	2	4	44	0	1	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	1/0	c0003	1293	20	6	6	0	2	5	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	c0004	1293	6	6	0	0	0	0	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	c0005	1293	4	0	4	0	0	0	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	c0006	1293	3	3	0	0	0	0	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	c0007	1293	2	0	0	2	0	0	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	c0008	1293	2	0	0	2	0	0	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	c0009	1293	1	0	0	0	0	1	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	c0010	1293	1	0	1	0	0	0	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	c0011	1293	1	0	0	1	0	0	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	c0012	1293	1	0	0	1	0	0	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	c0013	1293	1	0	0	1	0	0	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	c0014	1293	1	0	0	1	0	0	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	c0015	722	1	0	0	1	0	0	copy fasta	TEKT2	chr1	36079094	36093275
TEKT3_chr17_15298812_15346597	0/1	c0001	1473	143	17	30	68	6	21	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	c0002	1473	91	7	17	55	2	10	copy fasta	TEKT3	chr17	15298812	15346597