JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TEKT3_chr17_15298812_15346597	0/0	c0003	1473	62	1	12	37	6	6	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	c0004	1473	28	21	7	0	0	0	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	c0005	1473	21	20	1	0	0	0	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	1/0	c0006	1473	19	1	5	12	0	0	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	c0007	1473	10	7	1	1	0	1	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	c0008	1473	9	0	0	9	0	0	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	c0009	1473	3	3	0	0	0	0	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	c0010	1473	2	2	0	0	0	0	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	c0011	1473	2	2	0	0	0	0	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	c0012	1473	1	0	0	1	0	0	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	c0013	1473	1	1	0	0	0	0	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	c0014	1473	1	0	0	1	0	0	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	c0015	1473	1	1	0	0	0	0	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	c0016	1473	1	1	0	0	0	0	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	c0017	1473	1	1	0	0	0	0	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	c0018	1473	1	1	0	0	0	0	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	c0019	1473	1	0	1	0	0	0	copy fasta	TEKT3	chr17	15298812	15346597
TEKT4_chr2_94866430_94881823	1/0	c0001	1308	234	46	41	108	8	30	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/1	c0002	1308	125	17	26	72	1	8	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	c0003	1308	23	22	1	0	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	c0004	1308	12	0	7	1	2	2	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	c0005	1308	5	5	0	0	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	c0006	1308	5	0	1	4	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	c0007	1308	2	0	0	2	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	c0008	1308	2	0	0	2	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	c0009	1308	2	1	1	0	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	c0010	1308	2	0	1	0	1	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	c0011	1308	2	0	1	0	0	1	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	c0012	1308	1	0	0	1	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	c0013	1308	1	0	0	0	0	1	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	c0014	1308	1	0	0	1	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	c0015	1308	1	1	0	0	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	c0016	1308	1	0	0	1	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	c0017	1308	1	1	0	0	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	c0018	1308	1	1	0	0	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	c0019	1308	1	0	1	0	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	c0020	1308	1	1	0	0	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	c0021	1308	1	1	0	0	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	c0022	1308	1	0	0	1	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	c0023	1308	1	0	0	1	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT5_chr16_10622501_10699930	0/0	c0001	1458	112	10	19	67	1	15	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	1/1	c0002	1458	106	20	28	28	12	16	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	c0003	1458	69	41	3	19	1	5	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	c0004	1458	52	0	2	43	0	7	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	c0005	1458	13	9	2	1	0	1	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	c0006	1458	12	7	0	3	0	2	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	c0007	1458	4	1	2	0	1	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	c0008	1458	3	0	3	0	0	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	c0009	1458	2	0	2	0	0	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	c0010	1458	2	0	2	0	0	0	copy fasta	TEKT5	chr16	10622501	10699930