JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TEKT5_chr16_10622501_10699930	0/0	c0011	1458	2	1	1	0	0	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	c0012	1458	1	0	0	0	0	1	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	c0013	1458	1	0	0	0	1	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	c0014	1458	1	0	0	1	0	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	c0015	1458	1	0	0	1	0	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	c0016	1458	1	0	1	0	0	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	c0017	1458	1	0	0	0	0	1	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	c0018	1458	1	0	1	0	0	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	c0019	1458	1	0	1	0	0	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	c0020	1458	1	0	1	0	0	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	c0021	1458	1	1	0	0	0	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	c0022	1458	1	0	0	1	0	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKTIP1_chr19_3534174_3549030	0/0	c0001	630	205	2	46	140	2	15	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	1/1	c0002	630	158	44	37	41	8	26	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	c0003	630	44	40	3	0	0	1	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	c0004	630	14	6	1	0	0	7	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	c0005	640	5	5	0	0	0	0	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	c0006	630	3	0	0	3	0	0	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	c0007	630	2	0	0	2	0	0	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	c0008	630	1	0	0	1	0	0	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	c0009	630	1	0	0	0	1	0	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	c0010	630	1	1	0	0	0	0	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	c0011	630	1	1	0	0	0	0	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	c0012	630	1	1	0	0	0	0	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	c0013	630	1	0	0	0	1	0	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	c0014	630	1	0	0	0	0	1	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	c0015	630	1	0	1	0	0	0	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	c0016	630	1	0	0	1	0	0	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	c0017	630	1	0	0	1	0	0	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	c0018	630	1	0	0	1	0	0	copy fasta	TEKTIP1	chr19	3534174	3549030
TEK_chr9_27104225_27235174	0/0	c0001	3375	100	17	23	41	6	13	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0002	3375	32	6	11	6	2	7	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0003	3375	26	0	10	11	2	3	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0004	3375	24	8	5	8	1	2	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0005	3375	24	9	2	12	0	1	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0006	3375	22	8	7	1	0	6	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0007	3375	17	4	2	9	2	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0008	3375	8	7	0	1	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0009	3375	6	0	5	0	0	1	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0010	3375	6	2	0	2	0	2	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0011	3375	5	0	0	5	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	1/1	c0012	3375	5	0	1	0	2	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0013	3375	4	4	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0014	3375	3	0	0	3	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0015	3375	3	0	0	2	0	1	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0016	3375	2	2	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0017	3375	2	1	1	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0018	3375	2	0	0	2	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0019	3375	2	1	1	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0020	3375	2	1	0	0	0	1	copy fasta	TEK	chr9	27104225	27235174