JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TEK_chr9_27104225_27235174	0/0	c0021	3375	2	2	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0022	3375	2	2	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0023	3375	2	1	1	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0024	3375	2	0	0	2	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0025	3375	2	2	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0026	3375	2	0	1	0	1	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0027	3375	2	2	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0028	3375	2	1	1	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0029	3375	1	1	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0030	3375	1	1	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0031	3375	1	1	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0032	3375	1	0	0	1	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0033	3375	1	0	0	1	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0034	3375	1	0	0	1	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0035	3375	1	0	0	1	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0036	3375	1	0	0	1	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0037	3375	1	0	0	1	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0038	3375	1	0	1	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0039	3375	1	1	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0040	3375	1	0	1	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0041	3375	1	0	0	1	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0042	3375	1	1	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0043	3375	1	1	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0044	3375	1	0	1	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0045	3375	1	0	1	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0046	3375	1	0	0	1	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0047	3375	1	1	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0048	3375	1	0	0	1	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0049	3375	1	0	0	0	0	1	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0050	3375	1	0	0	1	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0051	3375	1	0	0	1	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0052	3375	1	0	0	1	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0053	3375	1	0	0	1	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0054	3375	1	1	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0055	3375	1	0	1	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0056	3375	1	1	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	c0057	3375	1	1	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TELO2_chr16_1488360_1515454	0/0	c0001	2514	55	2	21	17	10	5	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0002	2514	51	0	10	38	0	3	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	1/0	c0003	2514	35	9	13	1	3	8	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0004	2514	26	10	0	16	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0005	2514	24	18	2	0	0	4	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0006	2514	23	2	4	13	0	4	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0007	2514	20	0	4	12	1	3	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0008	2514	17	0	8	9	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0009	2514	15	2	1	7	1	4	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0010	2514	15	1	5	8	0	1	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0011	2514	14	2	1	9	0	2	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0012	2514	11	0	0	11	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0013	2514	11	0	1	10	0	0	copy fasta	TELO2	chr16	1488360	1515454