JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TELO2_chr16_1488360_1515454	0/0	c0014	2514	10	3	2	4	0	1	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0015	2514	5	2	0	3	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0016	2514	5	3	1	1	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0017	2514	5	0	0	5	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0018	2514	5	5	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0019	2514	5	5	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0020	2514	5	1	0	3	0	1	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0021	2514	4	0	0	4	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0022	2514	4	0	0	4	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0023	2514	4	0	0	4	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0024	2514	3	3	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0025	2514	3	3	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0026	2514	3	2	1	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0027	2514	3	3	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0028	2514	3	0	0	3	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0029	2514	3	3	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0030	2514	2	2	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0031	2514	2	0	2	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0032	2514	2	0	0	2	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0033	2514	2	0	0	2	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0034	2514	2	0	0	2	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0035	2514	2	0	0	0	0	2	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0036	2514	2	0	1	1	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0037	2514	2	0	1	0	0	1	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0038	2514	2	0	0	2	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0039	2514	2	0	0	0	2	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0040	2514	2	0	2	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0041	2514	2	2	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0042	2514	1	1	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0043	2514	1	0	0	1	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0044	2514	1	0	0	1	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0045	2514	1	1	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0046	2514	1	1	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0047	2514	1	0	0	1	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0048	2514	1	0	0	1	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0049	2514	1	0	0	1	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0050	2514	1	0	0	1	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0051	2514	1	0	0	1	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0052	2514	1	1	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0053	2514	1	0	0	0	0	1	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0054	2514	1	0	0	1	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0055	2514	1	0	0	0	1	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0056	2514	1	0	0	1	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0057	2514	1	1	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0058	2514	1	1	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0059	2514	1	0	0	1	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0060	2514	1	0	0	1	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0061	2514	1	1	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0062	2514	1	1	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/1	c0063	2514	1	0	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454